Sequence 1: | NP_524483.1 | Gene: | nAChRbeta2 / 42920 | FlyBaseID: | FBgn0004118 | Length: | 519 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_062171.1 | Gene: | Chrnd / 54240 | RGDID: | 2352 | Length: | 517 | Species: | Rattus norvegicus |
Alignment Length: | 485 | Identity: | 176/485 - (36%) |
---|---|---|---|
Similarity: | 272/485 - (56%) | Gaps: | 30/485 - (6%) |
- Green bases have known domain annotations that are detailed below.
Fly 29 DTKRLYDDLL--SNYNRLIRPVVNNTETLTVWLGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKL 91
Fly 92 RWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKATLKYTGEVFWEPPAIYKSSCEM 156
Fly 157 NVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSN----LVQVGIDLTEFYLSVEWDILEVP 217
Fly 218 ATKN-EEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVLVFYLPSDSGEKVTLCI 281
Fly 282 SILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTVCVLNIHFRSPSTHNMSPLV 346
Fly 347 RKLFLHFMPKLMMMRRTQYTLPDYDDSTP--------SNGYTNEIDVRDSI---SDFPSEFKDSQ 400
Fly 401 DG---AYDNGMQNSVDSDNVIPRNLTPEVLQALRAVRFIAQHIKDADKDNEIVEDWKFVSMVLDR 462
Fly 463 FFLWLFTLSCVFGTLAIICQSPSLYDTRSP 492 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta2 | NP_524483.1 | LIC | 9..479 | CDD:273305 | 172/470 (37%) |
LGIC_ECD_nAChR_proto_alpha-like | 29..247 | CDD:349832 | 78/224 (35%) | ||
Chrnd | NP_062171.1 | LIC | 23..476 | CDD:273305 | 168/458 (37%) |
Neur_chan_LBD | 25..246 | CDD:280998 | 77/221 (35%) | ||
Neur_chan_memb | 253..489 | CDD:280999 | 90/241 (37%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |