DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRbeta2 and Chrnd

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_062171.1 Gene:Chrnd / 54240 RGDID:2352 Length:517 Species:Rattus norvegicus


Alignment Length:485 Identity:176/485 - (36%)
Similarity:272/485 - (56%) Gaps:30/485 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 DTKRLYDDLL--SNYNRLIRPVVNNTETLTVWLGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKL 91
            :.:||...|.  ..||:.:|||....:.:.|.|.|.||.||.:....:.:|||:|:...|.|.:|
  Rat    24 EEQRLIQHLFEEKGYNKELRPVARKEDIVDVALSLTLSNLISLKEVEETLTTNVWIDHAWIDSRL 88

  Fly    92 RWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKATLKYTGEVFWEPPAIYKSSCEM 156
            :|:..|:|.:..|.:||:.:|:|:|||.||.||:::::......:..:|.|.|.||||::|||.:
  Rat    89 QWNANEFGNITVLRLPSDMVWLPEIVLENNNDGSFQISYACNVLVSDSGHVTWLPPAIFRSSCPI 153

  Fly   157 NVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSN----LVQVGIDLTEFYLSVEWDILEVP 217
            :|.|||:|.|.|.:||.|..|...::.|. |.|....|    :..:.||...|..:.||:|:...
  Rat   154 SVTYFPFDWQNCSLKFSSLKYTAKEIRLS-LKQEEEDNRSYPIEWIIIDPEGFTENGEWEIVHRA 217

  Fly   218 ATKN-EEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVLVFYLPSDSGEKVTLCI 281
            |..| :...|.......|:||.|.:|||.|||.:|::||||.::|:..||||||.|.|||.::.|
  Rat   218 AKVNVDPSVPMDSTNHQDVTFYLIIRRKPLFYIINILVPCVLISFMINLVFYLPGDCGEKTSVAI 282

  Fly   282 SILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTVCVLNIHFRSPSTHNMSPLV 346
            |:|::.:||.||:::.:|.||:|:||:||:|||.|:||::.|...|.|||||||:||||.:|..|
  Rat   283 SVLLAQSVFLLLISKRLPATSMAIPLVGKFLLFGMVLVTMVVVICVIVLNIHFRTPSTHVLSEGV 347

  Fly   347 RKLFLHFMPKLMMMRRTQYTLPDYDDSTP--------SNGYTNEIDVRDSI---SDFPSEFKDSQ 400
            :|.||..:|||:.|.|     |:.:|..|        |.||.::.:...|:   ||...|.:..:
  Rat   348 KKFFLETLPKLLHMSR-----PEEEDPGPRALIRRTSSLGYISKAEEYFSLKSRSDLMFEKQSER 407

  Fly   401 DG---AYDNGMQNSVDSDNVIPRNLTPEVLQALRAVRFIAQHIKDADKDNEIVEDWKFVSMVLDR 462
            .|   ......:....|:.| .:.|..|:..|:....||..|::|.:..||..::|..|:..:||
  Rat   408 HGLARRLTTARKPPASSEQV-QQELFNEMKPAVDGANFIVNHMRDQNSYNEEKDNWNQVARTVDR 471

  Fly   463 FFLWLFTLSCVFGTLAIICQSPSLYDTRSP 492
            ..|::.|...|.||..|..|  .:|:...|
  Rat   472 LCLFVVTPVMVVGTAWIFLQ--GVYNQPPP 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 172/470 (37%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 78/224 (35%)
ChrndNP_062171.1 LIC 23..476 CDD:273305 168/458 (37%)
Neur_chan_LBD 25..246 CDD:280998 77/221 (35%)
Neur_chan_memb 253..489 CDD:280999 90/241 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.