DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta2 and Chrne

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_017452660.1 Gene:Chrne / 29422 RGDID:2353 Length:547 Species:Rattus norvegicus


Alignment Length:474 Identity:159/474 - (33%)
Similarity:258/474 - (54%) Gaps:50/474 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 LYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKLRWDPEE 97
            ||..|..||:...|||....:|:|:.|.:.|:.||.:|.|.:.:||::|:...|.||:|.:..::
  Rat    80 LYHHLFDNYDPECRPVRRPEDTVTITLKVTLTNLISLNEKEETLTTSVWIGIEWQDYRLNFSKDD 144

  Fly    98 YGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKATLKYTGEVFWEPPAIYKSSCEMNVEYFP 162
            :.|||.|.|||||:|:|:|||.||.||.:.|.......:...|.|.|.|||||:|:|.:.|.|||
  Rat   145 FAGVEILRVPSEHVWLPEIVLENNIDGQFGVAYDCNVLVYEGGSVSWLPPAIYRSTCAVEVTYFP 209

  Fly   163 YDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVGIDLTEFYLSVEWDILEVPATKNEEYYPD 227
            :|.|.|.:.|.|.|||..:|:........|:.:.::.||...|..:.||.|         :|.|.
  Rat   210 FDWQNCSLIFRSQTYNAEEVEFIFAVDDDGNAINKIDIDTAAFTENGEWAI---------DYCPG 265

  Fly   228 TLEPF----------SDITFKLTMRRKTLFYTVNLIVPCVALTFLTVLVFYLPSDS-GEKVTLCI 281
            .:..:          :|:.:.|.:|||.|||.:|:|||||.::.|.:|.::||:.: |:|.|:.|
  Rat   266 MIRHYEGGSTEDPGETDVIYTLIIRRKPLFYVINIIVPCVLISGLVLLAYFLPAQAGGQKCTVSI 330

  Fly   282 SILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTVCVLNIHFRSPSTHNMSPLV 346
            ::|::.|||..|:|:.||.|||:|||||:||:|.|::.:|.|...|.|||:..|:|:||..||.:
  Rat   331 NVLLAQTVFLFLIAQKIPETSLSVPLLGRYLIFVMVVATLIVMNCVIVLNVSLRTPTTHATSPRL 395

  Fly   347 RKLFLHFMPKLMMMRRTQYTLPDYDD---STPSNGYTN--------EIDVRDSISDFPSEFKDSQ 400
            |::.|..:|:|:.:.      |..:|   ::|:...::        |:.::...|:...|.:..:
  Rat   396 RQILLELLPRLLGLS------PPPEDPGAASPARRASSVGILLRAEELILKKPRSELVFEGQRHR 454

  Fly   401 DGAYDNGMQNSVDSDNVIPRNLT---PEVLQALRAVRFIAQHIKDADKDNEIVEDWKFVSMVLDR 462
            .|.:         :...:.:||:   |||...:.||.|:|:..:|.:...|.:.||..:...||.
  Rat   455 HGTW---------TAAALCQNLSAAAPEVRCCVDAVNFVAESTRDQEATGEELSDWVRMGKALDN 510

  Fly   463 FFLW-LFTLSCVFGTLAII 480
            ...| ...|..|..||..:
  Rat   511 VCFWAALVLFSVGSTLIFL 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 159/471 (34%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 79/223 (35%)
ChrneXP_017452660.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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