Sequence 1: | NP_524483.1 | Gene: | nAChRbeta2 / 42920 | FlyBaseID: | FBgn0004118 | Length: | 519 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_504024.2 | Gene: | acr-23 / 191606 | WormBaseID: | WBGene00000062 | Length: | 545 | Species: | Caenorhabditis elegans |
Alignment Length: | 542 | Identity: | 142/542 - (26%) |
---|---|---|---|
Similarity: | 233/542 - (42%) | Gaps: | 112/542 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 17 NSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEVNLKNQVMTTNLW 81
Fly 82 VKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWD----GNYEVTLMTKATL-KYTG- 140
Fly 141 --EVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVGIDLT 203
Fly 204 EFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVLVFY 268
Fly 269 LP----------SDS-----GEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMIL 318
Fly 319 VSLSVWTTVCVLNIHFRS-------PS------THNMSPLVRKLFLHFMPKLM------------ 358
Fly 359 ----MMRRTQY----------------TLPD------YDDSTPSNGYTNEIDVRDSISDFPSEFK 397
Fly 398 DSQDGAYDNGMQ----NSVDSDNVIPRNLTPEVLQALRAVRFIAQHIKDADKDNEIVE-DWKFVS 457
Fly 458 MVLDRFFLWLFTLSCVFGTLAI 479 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta2 | NP_524483.1 | LIC | 9..479 | CDD:273305 | 141/540 (26%) |
LGIC_ECD_nAChR_proto_alpha-like | 29..247 | CDD:349832 | 66/225 (29%) | ||
acr-23 | NP_504024.2 | Neur_chan_LBD | 27..242 | CDD:280998 | 66/229 (29%) |
Neur_chan_memb | 249..529 | CDD:280999 | 68/297 (23%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.910 |