DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta2 and acr-23

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_504024.2 Gene:acr-23 / 191606 WormBaseID:WBGene00000062 Length:545 Species:Caenorhabditis elegans


Alignment Length:542 Identity:142/542 - (26%)
Similarity:233/542 - (42%) Gaps:112/542 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 NSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEVNLKNQVMTTNLW 81
            |...||.:|       |.::::.||.:.:.|.|.....:.|.|.|:|.|:|:||...|.:..|.|
 Worm    21 NPDIPIQYE-------LANNIMENYQKGLIPKVRKGSPINVTLSLQLYQIIQVNEPQQYLLLNAW 78

  Fly    82 VKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWD----GNYEVTLMTKATL-KYTG- 140
            ..:||.|..|.|||.|:....::....:.||:||..|||:.:    .:.::|.:...|| |..| 
 Worm    79 AVERWVDQMLGWDPSEFDNETEIMARHDDIWLPDTTLYNSLEMDDSASKKLTHVKLTTLGKNQGA 143

  Fly   141 --EVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVGIDLT 203
              |:.:  |.|||.||.:|::|||:|.|.|.|.||||:::.:.:     |..| .......|.|.
 Worm   144 MVELLY--PTIYKISCLLNLKYFPFDTQTCRMTFGSWSFDNSLI-----DYFP-RTFTNGPIGLA 200

  Fly   204 EFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVLVFY 268
            .|..:..|.:|.....:.|:.|......::.:.:.:.::||.|:|.:|||.|...:||::::.|:
 Worm   201 NFLENDAWSVLGTKVNREEKKYTCCPVNYTLLHYDVVIQRKPLYYVLNLIAPTAVITFISIIGFF 265

  Fly   269 LP----------SDS-----GEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMIL 318
            ..          |.|     .||:||.|:.|:|:::...::::.:|.||..|||:.  |.:|:::
 Worm   266 TSVNPFTNFCNVSSSVHDLRQEKITLGITTLLSMSIMIFMVSDKMPSTSTCVPLIA--LFYTLMI 328

  Fly   319 VSLSVWTTVCVLNIHFRS-------PS------THNMSPLVRKLFLHFMPKLM------------ 358
            ..:||.|......|..:.       |:      ||.::|.|    |..||.:|            
 Worm   329 TIISVGTLAASSVIFVQKLGSIGNPPASKTMKWTHRIAPFV----LIQMPLVMKQAYAKRAKEEK 389

  Fly   359 ----MMRRTQY----------------TLPD------YDDSTPSNGYTNEIDVRDSISDFPSEFK 397
                |.|:...                |:||      ......:|...|....|.:.|.....|.
 Worm   390 HRKRMSRKNSMWTKVYHLARDHSKLMETVPDGAVKFNQISDFKNNDIGNMESPRMAESQTSETFA 454

  Fly   398 DSQDGAYDNGMQ----NSVDSDNVIPRNLTPEVLQALRAVRFIAQHIKDADKDNEIVE-DWKFVS 457
            ...|.::...:.    |.|.|.|.|...|.|..:|.....            ...||| :|.:|:
 Worm   455 APMDTSFTESLHIPELNRVASSNSIQSVLKPTEIQLTPYC------------TRNIVELEWDWVA 507

  Fly   458 MVLDRFFLWLFTLSCVFGTLAI 479
            .||:|.||..||:..:|..:.|
 Worm   508 AVLERVFLIFFTICFLFSAIGI 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 141/540 (26%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 66/225 (29%)
acr-23NP_504024.2 Neur_chan_LBD 27..242 CDD:280998 66/229 (29%)
Neur_chan_memb 249..529 CDD:280999 68/297 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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