DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRbeta2 and acr-6

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_491354.2 Gene:acr-6 / 191479 WormBaseID:WBGene00000045 Length:551 Species:Caenorhabditis elegans


Alignment Length:556 Identity:200/556 - (35%)
Similarity:314/556 - (56%) Gaps:81/556 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VFLLVPLANSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEVNLKN 73
            :|.|:.|..|....||.|   .|.|::.||:.||::..|......|||:...|:|.|:::|:.|:
 Worm     2 LFRLILLLFSIRLCSFTA---YKSLFETLLARYNKIAFPSGEFNNTLTIEFKLRLDQIVDVHEKD 63

  Fly    74 QVMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKATLKY 138
            ||:|....:...|.||:|.|:|:|:|.:..::.|.|.:|:|||:||||..|:..|:..|:..:.:
 Worm    64 QVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPGEMLWLPDIILYNNAHGSPWVSETTQVHVSF 128

  Fly   139 TGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHL--DQ------IPGSNL 195
            .|.|.|:||.:|.:.|.:::|::|||.|||.:|||||||.|:|::|.||  ||      ..|.|:
 Worm   129 EGRVTWQPPVVYDAFCNIDIEWYPYDLQICELKFGSWTYGGSQLNLIHLTTDQANESTDATGDNV 193

  Fly   196 --VQVGIDLTEFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVA 258
              |:.|:||:.:..|||||:|.|...:::::||....|..|||:.|.:|||.||||||:|:|||.
 Worm   194 WKVERGVDLSNYQESVEWDLLSVEGIRHKKWYPCCDYPSIDITYYLHIRRKKLFYTVNMIIPCVC 258

  Fly   259 LTFLTVLVFYLPSDSGEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSV 323
            |..:|:.|||||.:|.:|:.||||:||:||::||:|.:||||||:..||:.|||.||||:|:|||
 Worm   259 LASMTLWVFYLPCESHQKIQLCISVLVALTLYFLMLIDIIPPTSIVTPLILKYLSFTMIMVALSV 323

  Fly   324 WTTVCVLNIHFRS---PSTHNMSPLVRKLFLHFM-PKLMMMRRT--------------------- 363
            ..||.:.|||:|:   |    |...|:..|:..: .||::.|:|                     
 Worm   324 TCTVFIQNIHYRAYYQP----MPRFVKHWFIEKLGKKLLISRKTEQAQYHRTAQHVKQVNALSAM 384

  Fly   364 -------QYTLPDYDDSTPS-----------NGYTNEIDVRD-SISDFPSEFKDSQDGAYDNGMQ 409
                   |.||.:.:.:|.:           |....|:.:.: |:|   .:.:.....|..|.|:
 Worm   385 NILEKQFQKTLFELEIATMAKKTVTAAPKTVNSIFLELPMMNRSVS---VKIRKPSVKAVKNRMR 446

  Fly   410 N--SVDSDNVI----PRNLTPE-----------VLQALRAVRFIAQHIKDADKDNEIVEDWKFVS 457
            .  |:|..:.|    ...::||           :.:|.:.:.|||:.:.|..:..|...||:|||
 Worm   447 RLLSIDMTDDIRGKETEEISPETTKDTDPDREKLRKAEKNIHFIAKTLTDERRAQEAEADWQFVS 511

  Fly   458 MVLDRFFLWLFTLSCVFGTLAIICQSPSLYDTRSPI 493
            :|:||..|.:|:.:...||:..|..:|::.|.|.||
 Worm   512 LVIDRMLLIIFSFTITIGTILTIFSAPTMRDNREPI 547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 194/540 (36%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 90/227 (40%)
acr-6NP_491354.2 Neur_chan_LBD 23..244 CDD:280998 87/220 (40%)
Neur_chan_memb 252..524 CDD:280999 89/278 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.