DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta2 and lgc-19

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_502905.2 Gene:lgc-19 / 190895 WormBaseID:WBGene00013655 Length:400 Species:Caenorhabditis elegans


Alignment Length:381 Identity:78/381 - (20%)
Similarity:159/381 - (41%) Gaps:87/381 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLS--------------------QLIEVNLKNQ 74
            ||.::.|    |:..:.||.       .|:.:.|.                    :|:||....:
 Worm    38 TKHIFRD----YDPTVSPVY-------TWVDVDLPIGYDNEAPKRYNYTIFLYYLKLVEVQEPQE 91

  Fly    75 VMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVP--------DIVLYNNWDGNYEVTLM 131
            .::..:.:.:.|:|.:|.|:...:.....:|:..:.:|.|        |||.:.:.|...     
 Worm    92 KISVVMEIMEYWYDARLSWNASAWQNTTMIYMKQDKVWSPTISVFGVNDIVDFRDNDNRL----- 151

  Fly   132 TKATLKYTGEVFWEPPAI-YKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNL 195
              ..::.||.: |:..:: ..::|||:|..||:|.|||.::|....:...|||:           
 Worm   152 --ICIENTGFI-WDYVSVRVSANCEMDVSRFPFDTQICQIRFCLPIFYRVQVDI----------- 202

  Fly   196 VQVGIDLTEFYLSV------------EWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFY 248
                  |.|.|..:            ||.:|.:........|.|.:.......|::|:||..|:|
 Worm   203 ------LNEIYEEIMDERIFKTMGNSEWKLLNLTNRVEALVYNDNMGTMDLAIFEITIRRNPLYY 261

  Fly   249 TVNLIVPCVALTFLTVL-VFYLPSDSGEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYL 312
            ...::.|...:.|:::: ||...:|...::.:.::.::::|....::|:.||.|. .:||||.|:
 Worm   262 IYMIVFPSFIINFVSIVGVFLNGADKMSRLNVGLTNIMTMTFILGVMADKIPRTG-NIPLLGIYI 325

  Fly   313 LFTMI--LVSLSVWTTVCVLNIHFRSPSTHNMSPLVRKLFLHFMPKLMMMRRTQYT 366
            :..::  |:::::.|.:..|. .:.||........:|.....|:.     |..:||
 Worm   326 IINLVIMLIAIAIVTAITELR-KWASPKLRKKKTALRAQLESFLG-----RPLEYT 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 78/381 (20%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 51/257 (20%)
lgc-19NP_502905.2 LGIC_ECD_cation 75..257 CDD:349790 42/206 (20%)
LGIC_TM_cation 259..>346 CDD:349853 19/87 (22%)
TM1 helix 263..284 CDD:349853 4/20 (20%)
TM2 helix 292..313 CDD:349853 2/20 (10%)
TM3 helix 323..346 CDD:349853 3/22 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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