DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta2 and lgc-1

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_504154.5 Gene:lgc-1 / 188099 WormBaseID:WBGene00020236 Length:371 Species:Caenorhabditis elegans


Alignment Length:340 Identity:85/340 - (25%)
Similarity:154/340 - (45%) Gaps:61/340 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 DTKRLYDDLLSNYNRLIRPV--------VNNTET---------LTVWLGLKLSQLIEVNLKNQVM 76
            |.|||:|||..:|:..:..:        :|.|.|         ||:.: |||..::||..|...:
 Worm    15 DQKRLWDDLFKDYDPTLSAIYTLHKSQWINQTATIHPPITELKLTMAM-LKLVDVVEVEEKVTFL 78

  Fly    77 TTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTK------AT 135
            ...|   ..|.|.:|:|:|.||||:..:|||...||:|::.:.:    .:||.....      |.
 Worm    79 FDYL---AEWTDQRLKWNPLEYGGISHIYVPQRMIWLPEVTIAD----AHEVKFFESDDAPRTAW 136

  Fly   136 LKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLK-HLDQIPGSNLVQVG 199
            :.|.|...:....:....|:::|..||.|...|.:.....||...:..:| .::.:| ..|.|:|
 Worm   137 INYNGTTGFYTSTVSSVICQLDVYKFPLDRHECGVSVLFHTYFADEYVIKSDMEPLP-KPLSQLG 200

  Fly   200 IDLTEFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMR------RKTLFYTVNLIVPCVA 258
                    :.||.:.          |....|...:..|....|      |...||...::||...
 Worm   201 --------NGEWKVT----------YIGVAEEIGNGNFSAVQRFVARIERNPGFYVTLVMVPAFF 247

  Fly   259 LTFLTVLVFYLPSDS-GEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILV--S 320
            :.||:::...|..:: |||:|:.::.::::|...::||:.:|.|. .:|||..|::..:::|  |
 Worm   248 INFLSIIALCLNIENVGEKITVGLTNIMAMTFILVILAQDLPKTK-RIPLLAIYVIVGLVIVMAS 311

  Fly   321 LSVWTTVCVLNIHFR 335
            :.|..|:.::..|.:
 Worm   312 IGVVLTLPLIRNHLK 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 85/340 (25%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 60/247 (24%)
lgc-1NP_504154.5 Neur_chan_LBD 84..>335 CDD:332142 65/267 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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