DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta2 and lgc-15

DIOPT Version :10

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_510025.2 Gene:lgc-15 / 187973 WormBaseID:WBGene00011356 Length:399 Species:Caenorhabditis elegans


Alignment Length:342 Identity:78/342 - (22%)
Similarity:155/342 - (45%) Gaps:39/342 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 LYDDLLSNYNRLIRPV---VNNTETL----------TVWLGLKLSQLIEVNLKNQVMTTNLWVKQ 84
            |..:|.|.|:..|.||   |:.|:.|          ...|.|...:|:||....:.::..:.|.:
 Worm    38 LTKNLFSGYDATISPVYTKVDPTQPLGHDPDAPGRWNYTLLLFSLKLVEVTEPQEKVSVVMEVME 102

  Fly    85 RWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKATLKYTGEVFWEPPAI 149
            .|||.:|.|:.|:|..:..:|....::|.|.:..:    |..|:..:.....:..|...:.....
 Worm   103 YWFDARLTWNKEDYDDIASIYTRQANVWSPTLSAF----GVSELVDLRDTDFRLVGITSYGMVNT 163

  Fly   150 YKS-----SCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVGIDLTEFYLSV 209
            |.|     :|.|:|..||:|.|.|.::|....:...:|::        .|.:..|:..:..:.::
 Worm   164 YVSVLVSANCPMDVYKFPFDYQTCQIRFCIPVFTSYEVEI--------FNEIYAGVLTSNAWKTM 220

  Fly   210 ---EWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVL-VFYLP 270
               ||:::.:........|.|........||::.:||..|:|...:|.|...:..:::: ||...
 Worm   221 GNSEWNLVNLTHRVETLKYDDGFANLDLGTFEIKIRRNPLYYIYMIIFPSFIINVVSIIGVFLKG 285

  Fly   271 SDSGEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTVCVLNIHFR 335
            :|...|:.:.::.::::|....::|:.||.|. .:||||.|::..::::.::: ..|.|:|...|
 Worm   286 ADKMSKLNVGLTNIMTMTFILGVMADKIPRTG-TIPLLGVYIITNLVIMLIAI-GIVTVINELRR 348

  Fly   336 SPS---THNMSPLVRKL 349
            ..|   ....:.|.|||
 Worm   349 CASPVLKRKQTKLSRKL 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:455710 78/342 (23%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 51/234 (22%)
Cys-loop 154..168 CDD:349832 7/13 (54%)
lgc-15NP_510025.2 LGIC_ECD_cation 74..258 CDD:349790 40/195 (21%)
Cys-loop 173..187 CDD:349790 7/13 (54%)
LGIC_TM_cation 260..>343 CDD:349853 19/84 (23%)
TM1 helix 260..285 CDD:349853 6/24 (25%)
TM2 helix 293..314 CDD:349853 2/20 (10%)
TM3 helix 324..343 CDD:349853 2/19 (11%)

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