| Sequence 1: | NP_524483.1 | Gene: | nAChRbeta2 / 42920 | FlyBaseID: | FBgn0004118 | Length: | 519 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_510024.2 | Gene: | lgc-14 / 187972 | WormBaseID: | WBGene00011355 | Length: | 400 | Species: | Caenorhabditis elegans |
| Alignment Length: | 346 | Identity: | 72/346 - (20%) |
|---|---|---|---|
| Similarity: | 151/346 - (43%) | Gaps: | 45/346 - (13%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 36 DLLSNYNRLIRPVVNNTETLTVWLG--------------LKLSQLIEVNLKNQVMTTNLWVKQRW 86
Fly 87 FDYKLRWDPEEYGGVEQLYVPSEHIWVPDI------VLYNNWDGNYEVTLMTKATLKYTGEVFWE 145
Fly 146 PPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVGI---DLTEFYL 207
Fly 208 SVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVL-VFYLPS 271
Fly 272 DSGEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTVCVLNIHFRS 336
Fly 337 PSTHNMSPLVRKLFLHFMPKL 357 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| nAChRbeta2 | NP_524483.1 | LIC | 9..479 | CDD:273305 | 72/346 (21%) |
| LGIC_ECD_nAChR_proto_alpha-like | 29..247 | CDD:349832 | 51/233 (22%) | ||
| lgc-14 | NP_510024.2 | LGIC_ECD_cation | 75..257 | CDD:349790 | 42/194 (22%) |
| LGIC_TM | 259..349 | CDD:365787 | 17/96 (18%) | ||
| TM1 helix | 259..284 | CDD:349850 | 6/24 (25%) | ||
| TM2 helix | 292..313 | CDD:349850 | 2/20 (10%) | ||
| TM3 helix | 323..345 | CDD:349850 | 1/21 (5%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 2 | 1.810 | |||||