Sequence 1: | NP_524483.1 | Gene: | nAChRbeta2 / 42920 | FlyBaseID: | FBgn0004118 | Length: | 519 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001367183.1 | Gene: | acr-20 / 187632 | WormBaseID: | WBGene00000059 | Length: | 556 | Species: | Caenorhabditis elegans |
Alignment Length: | 540 | Identity: | 141/540 - (26%) |
---|---|---|---|
Similarity: | 237/540 - (43%) | Gaps: | 112/540 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 29 DTKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKLRW 93
Fly 94 DPEEYGGVEQLYVPSEHIWVPDIVLYNNW----DGNYEVTLMTKATLKYTGEVFWE--PPAIYKS 152
Fly 153 SCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVGIDLTEFYLSVEWDILEVP 217
Fly 218 ATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVLVFYLPSDSG----EKVT 278
Fly 279 LCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTVC---VLNI----HFRS 336
Fly 337 PSTHNMSPLVRKL--FLHF-MPKLM-----------MMRRTQ-----------YTL-------PD 369
Fly 370 YDDSTPSNGYTNEIDVRDSISDFPSE----FKD----SQDGAYDNGMQN--SVDSD---NVIPRN 421
Fly 422 LTP---------------------------EVLQALRAVRFIAQHIKDADKDNEIVEDWKFVSMV 459
Fly 460 LDRFFLWLFTLSCVFGTLAI 479 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta2 | NP_524483.1 | LIC | 9..479 | CDD:273305 | 140/538 (26%) |
LGIC_ECD_nAChR_proto_alpha-like | 29..247 | CDD:349832 | 68/223 (30%) | ||
acr-20 | NP_001367183.1 | Neur_chan_LBD | 24..238 | CDD:397192 | 66/220 (30%) |
LGIC_TM_cation | 239..>329 | CDD:349853 | 29/92 (32%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.010 |