DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta2 and lgc-5

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_501411.4 Gene:lgc-5 / 184620 WormBaseID:WBGene00017543 Length:433 Species:Caenorhabditis elegans


Alignment Length:355 Identity:89/355 - (25%)
Similarity:172/355 - (48%) Gaps:53/355 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 WHWSLLCVFLLVPL--ANSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLT-------V 57
            |..:.|..||::..  :|:|   :.|:|  |:.|..:|   :||.....|..::|||       .
 Worm     3 WLLNSLLTFLVLRTFGSNTT---NVESN--TEVLLQEL---FNRTYDVNVKPSDTLTTVTITPNT 59

  Fly    58 WLGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKLRWDPE--EYGGVEQLYVPSEHIWVPDIVLYN 120
            :|.|.:.|..|..|.:|....      :|:|..|.|:..  :|.. |.:.:....:||||::...
 Worm    60 FLLLSMDQTQETILFSQEFLL------KWYDPILHWNRTLFDYNR-EWIKISVSRVWVPDVIFTK 117

  Fly   121 NWDGNYEVTL---MTKATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQV 182
            ..  :.|..|   |..|.|:|.||:....||:..:||.:|::.||:|.|.|.:..|||.::...:
 Worm   118 RL--SVESLLDEDMQMADLRYNGEIRTSLPAVVSTSCPLNIQDFPHDVQECNISMGSWAFDRTVI 180

  Fly   183 DLKHLDQIPGSNLVQVGID-----LTEFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMR 242
                        :||..:|     ...|..:.||::|.:.|.:.:.:.......||:||:.:|::
 Worm   181 ------------VVQSSVDEILPLRGRFEGNSEWELLSIRAFRTDSFEYSLGTSFSEITYTVTLQ 233

  Fly   243 RKTLFYTVNLIVPCVALTFLTVLVFYLP-SDSGE---KVTLCISILVSLTVFFLLLAEIIPPTSL 303
            ||.::|.:.:..|...|..:|:...:.| |:..|   :|.||:::..::::...|:::::|..| 
 Worm   234 RKPVYYVLVIQAPTFILCTITIFGLFSPNSNENERLSRVELCLNMFAAISMMLQLVSDMMPKAS- 297

  Fly   304 AVPLLGKYLLFTMILVSLSVWTTVCVLNIH 333
            .:||||.|::..:.:|:.:....:.:.::|
 Worm   298 RLPLLGNYIIAEIFVVTAATIAAIVIQHVH 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 87/348 (25%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 61/234 (26%)
lgc-5NP_501411.4 LGIC_ECD_cation 51..235 CDD:349790 51/204 (25%)
LGIC_TM 238..>323 CDD:365787 19/85 (22%)
TM1 helix 238..261 CDD:349850 4/22 (18%)
TM2 helix 273..294 CDD:349850 3/20 (15%)
TM3 helix 304..323 CDD:349850 2/18 (11%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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