DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRbeta2 and acr-2

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:NP_509128.1 Gene:acr-2 / 180936 WormBaseID:WBGene00000042 Length:575 Species:Caenorhabditis elegans


Alignment Length:535 Identity:202/535 - (37%)
Similarity:308/535 - (57%) Gaps:70/535 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 DTKRLYDDLLSNYNRLIRPVVN-NTETLTVWLGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKLR 92
            |..||..||...||.|||||.| ::..:.|..|:.:..||.|:.|||::.||:|:..:|.|::|.
 Worm    59 DEDRLVIDLFREYNFLIRPVKNVSSPPVVVDFGVAMILLINVDEKNQILQTNVWLTMKWNDFQLA 123

  Fly    93 WDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKATLKYTGEVFWEPPAIYKSSCEMN 157
            |:|.|||.:..|:|||:.:|:|||||:||.||||||:..:...:.:.|:|.|.|||::||||.::
 Worm   124 WNPAEYGNISNLHVPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTWVPPAMFKSSCRID 188

  Fly   158 VEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVGIDLTEFYLSVEWDILEVPATKNE 222
            ||:||:|||.|.:.|||||||..:|.|...:.|.       .:.|.::..|..||:::||.  ..
 Worm   189 VEWFPFDEQCCTLVFGSWTYNSEEVRLHWYNNIQ-------AVQLHDYSYSGIWDVIDVPG--QL 244

  Fly   223 EYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVLVFYLPSDSGEKVTLCISILVSL 287
            .:.||..|  :.:.|.:.:|||||||||.||:|.|.:.||:|:.||||.||||||:|.||:|::|
 Worm   245 VHKPDLKE--NKMVFNVVIRRKTLFYTVILIIPTVLMAFLSVMAFYLPVDSGEKVSLTISLLLAL 307

  Fly   288 TVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTVCVLNIHFRSPSTHNMSPLVRKLFLH 352
            .||.||:::|:|||| .:||:|||||...:|...:|..||.::||:|||..:|.|...|||:||.
 Worm   308 VVFLLLVSKILPPTS-NIPLMGKYLLLAFVLNITAVVGTVVIVNIYFRSALSHKMPTWVRKVFLE 371

  Fly   353 FMPKLMMMRRTQ-------YTLPDY------------------------------DDSTPSNGYT 380
            |:|.|::|:|.:       |.:.:|                              ..|:.|:|.:
 Worm   372 FLPHLLVMKRPERIPIFNGYFVEEYCASEIFDASLVMPSMTATMLPFLQVTTNLKAASSTSSGQS 436

  Fly   381 NE-----------IDVRDSISDFP-SEFKDSQDGAYDNGMQNSVDSDNVIPRNLTPEVLQALRAV 433
            :|           :.:|.|....| :...|..:...|:...|.|||   :...::.|:...:.|:
 Worm   437 SEHHENCSKWKKRLSIRMSKRRAPRARLDDDSEDIIDDTNGNHVDS---LQEKISKEMKTTVEAI 498

  Fly   434 RFIAQHIKDADKDNEIVEDWKFVSMVLDRFFLWLFTLSCVFGTLAIICQSPSLYDTRSPIDRQLS 498
            .:||:|:|......::.:|||:|:|||||..|.:|....:.|||.|||.:|.::|.   :|::  
 Worm   499 AYIAEHMKREMSLKKMRDDWKYVAMVLDRLILLIFFGVTLGGTLGIICSAPHVFDF---VDQE-- 558

  Fly   499 EIPLRKNNFMLPPDI 513
            .|..:.|...||.|:
 Worm   559 AIISKLNAKYLPSDM 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 191/499 (38%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 92/218 (42%)
acr-2NP_509128.1 LIC 54..544 CDD:273305 191/499 (38%)
Neur_chan_LBD 60..265 CDD:280998 89/215 (41%)
Neur_chan_memb 272..544 CDD:280999 94/275 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.