DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta2 and LOC1279487

DIOPT Version :10

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_061513970.1 Gene:LOC1279487 / 1279487 VectorBaseID:AGAMI1_005449 Length:433 Species:Anopheles gambiae


Alignment Length:111 Identity:23/111 - (20%)
Similarity:36/111 - (32%) Gaps:42/111 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 DSDSDGYLNIVEMKHLIHEKKCA------------DMPKDLALHLLKLSDTNNDGRL-------D 81
            |:.|.|    |....:..::||.            .|.|:....|:|.:||....::       .
Mosquito   224 DNQSRG----VGFARMDSKEKCEVIISALNGGRFDTMSKEGPALLIKQADTGRKSKVGSTSRHPS 284

  Fly    82 FEEFYKL-----------SLEHPYFLCEM--------YIKYCKAVV 108
            |::|..|           |:.:|..|..|        |..|..|.|
Mosquito   285 FQQFSSLGGPTAFLNGQHSMNNPEMLQRMQYPQVYQSYYGYHPAAV 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:455710 23/111 (21%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 23/111 (21%)
Cys-loop 154..168 CDD:349832
LOC1279487XP_061513970.1 None
Blue background indicates that the domain is not in the aligned region.

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