DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta2 and LOC1275309

DIOPT Version :10

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_314547.3 Gene:LOC1275309 / 1275309 VectorBaseID:AGAMI1_003422 Length:332 Species:Anopheles gambiae


Alignment Length:141 Identity:39/141 - (27%)
Similarity:58/141 - (41%) Gaps:24/141 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 WHWSLLCVFLLVPL----ANSTAPI---SFEANPDTK-RLYDDLLSNYNRLIRPVVNNTETLTVW 58
            |..:|...|...||    .|.||.|   ..|...|.| ||.|.|| ...|.|.|.||       :
Mosquito   180 WGTALAKWFYDCPLPANSTNGTALIDGNELEQEFDGKQRLLDHLL-GVPRWIDPPVN-------F 236

  Fly    59 LGLKLSQL-IEVNLKNQVMTTNL-----WVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIV 117
            .|:::||: |:..:.:|  ||||     .:...|.|.:.||:..::.....:......||.|...
Mosquito   237 SGVQISQMYIQGFVYDQ--TTNLVELSGAMGLSWKDPRYRWNASDFDNTTVVGDVCHLIWTPSFQ 299

  Fly   118 LYNNWDGNYEV 128
            ..:.:.|.:.:
Mosquito   300 SASLFTGTFSL 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:455710 37/134 (28%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 29/107 (27%)
Cys-loop 154..168 CDD:349832
LOC1275309XP_314547.3 None
Blue background indicates that the domain is not in the aligned region.

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