Sequence 1: | NP_524483.1 | Gene: | nAChRbeta2 / 42920 | FlyBaseID: | FBgn0004118 | Length: | 519 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006532069.1 | Gene: | Chrne / 11448 | MGIID: | 87894 | Length: | 494 | Species: | Mus musculus |
Alignment Length: | 501 | Identity: | 163/501 - (32%) |
---|---|---|---|
Similarity: | 262/501 - (52%) | Gaps: | 53/501 - (10%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 SLLCVFLLVPLANSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEV 69
Fly 70 NLKNQVMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKA 134
Fly 135 TLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVG 199
Fly 200 IDLTEFYLSVEWDILEVPATKNEEYYPDTLEPF----------SDITFKLTMRRKTLFYTVNLIV 254
Fly 255 PCVALTFLTVLVFYLPSDS-GEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMIL 318
Fly 319 VSLSVWTTVCVLNIHFRSPSTHNMSPLVRKLFLHFMPKLMMMRRTQYTLPDYDDSTPSNG----- 378
Fly 379 -----YTNEIDVRDSISDFPSEFKDSQDGAYDNGMQNSVDSDNVIPRNL---TPEVLQALRAVRF 435
Fly 436 IAQHIKDADKDNEIVEDWKFVSMVLDRFFLW-LFTLSCVFGTLAII 480 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta2 | NP_524483.1 | LIC | 9..479 | CDD:273305 | 161/494 (33%) |
LGIC_ECD_nAChR_proto_alpha-like | 29..247 | CDD:349832 | 78/227 (34%) | ||
Chrne | XP_006532069.1 | LGIC_ECD_nAChR_E | 49..239 | CDD:349831 | 67/198 (34%) |
Neur_chan_memb | 247..474 | CDD:367256 | 75/240 (31%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |