DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRbeta2 and Chrne

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_006532069.1 Gene:Chrne / 11448 MGIID:87894 Length:494 Species:Mus musculus


Alignment Length:501 Identity:163/501 - (32%)
Similarity:262/501 - (52%) Gaps:53/501 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SLLCVFLLVPLANSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEV 69
            :||...||:.|...:     :...:...||..|..||:...|||....:|:|:.|.:.|:.||.:
Mouse     4 ALLGALLLLTLFGRS-----QGKNEELSLYHHLFDNYDPECRPVRRPEDTVTITLKVTLTNLISL 63

  Fly    70 NLKNQVMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKA 134
            |.|.:.:||::|:...|.||:|.:..:::.||..|.|||||:|:|:|||.||.||.:.|...:..
Mouse    64 NEKEETLTTSVWIGIDWHDYRLNYSKDDFAGVGILRVPSEHVWLPEIVLENNIDGQFGVAYDSNV 128

  Fly   135 TLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVG 199
            .:...|.|.|.|||||:|:|.:.|.|||:|.|.|.:.|.|.|||..:|:........|:.:.::.
Mouse   129 LVYEGGYVSWLPPAIYRSTCAVEVTYFPFDWQNCSLIFRSQTYNAEEVEFIFAVDDDGNTINKID 193

  Fly   200 IDLTEFYLSVEWDILEVPATKNEEYYPDTLEPF----------SDITFKLTMRRKTLFYTVNLIV 254
            ||...|..:.||.|         :|.|..:..:          :|:.:.|.:|||.|||.:|:||
Mouse   194 IDTAAFTENGEWAI---------DYCPGMIRRYEGGSTEGPGETDVIYTLIIRRKPLFYVINIIV 249

  Fly   255 PCVALTFLTVLVFYLPSDS-GEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMIL 318
            |||.::.|.:|.::||:.: |:|.|:.|::|::.|||..|:|:.||.|||:|||||:||:|.|::
Mouse   250 PCVLISGLVLLAYFLPAQAGGQKCTVSINVLLAQTVFLFLIAQKIPETSLSVPLLGRYLIFVMVV 314

  Fly   319 VSLSVWTTVCVLNIHFRSPSTHNMSPLVRKLFLHFMPKLMMMRRTQYTLPDYDDSTPSNG----- 378
            .:|.|...|.|||:..|:|:||..||.:|::.|..:|:|:     ..:.|..|..|.|..     
Mouse   315 ATLIVMNCVIVLNVSLRTPTTHATSPRLRQILLELLPRLL-----GSSPPPEDPRTASPARRASS 374

  Fly   379 -----YTNEIDVRDSISDFPSEFKDSQDGAYDNGMQNSVDSDNVIPRNL---TPEVLQALRAVRF 435
                 ...|:.::...|:...|.:..:.|.:         :...:.:||   .||:...:.||.|
Mouse   375 VGILLRAEELILKKPRSELVFEGQRHRHGTW---------TAAALCQNLGAAAPEIRCCVDAVNF 430

  Fly   436 IAQHIKDADKDNEIVEDWKFVSMVLDRFFLW-LFTLSCVFGTLAII 480
            :|:..:|.:...|.:.||..:...||....| ...|..|..||..:
Mouse   431 VAESTRDQEATGEELSDWVRMGKALDNVCFWAALVLFSVGSTLIFL 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 161/494 (33%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 78/227 (34%)
ChrneXP_006532069.1 LGIC_ECD_nAChR_E 49..239 CDD:349831 67/198 (34%)
Neur_chan_memb 247..474 CDD:367256 75/240 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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