Sequence 1: | NP_524483.1 | Gene: | nAChRbeta2 / 42920 | FlyBaseID: | FBgn0004118 | Length: | 519 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_031416.3 | Gene: | Chrna7 / 11441 | MGIID: | 99779 | Length: | 502 | Species: | Mus musculus |
Alignment Length: | 490 | Identity: | 177/490 - (36%) |
---|---|---|---|
Similarity: | 274/490 - (55%) | Gaps: | 47/490 - (9%) |
- Green bases have known domain annotations that are detailed below.
Fly 31 KRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKLRWDP 95
Fly 96 EEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKATLKYTGEVFWEPPAIYKSSCEMNVEY 160
Fly 161 FPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVGIDLTEFYLSVEWDILEVPATKNEEYY 225
Fly 226 PDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVLVFYLPSDSGEKVTLCISILVSLTVF 290
Fly 291 FLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTVCVLNIHFRSPSTHNMSPLVRKLFLHFMP 355
Fly 356 KLMMMRRTQYTLPDYDDSTP------------------------SNGYTNEIDVRDSISDFPSEF 396
Fly 397 KDSQDGAYDNGMQNSVDSDNVI-----PRNLTPEVLQALRAVRFIAQHIKDADKDNEIVEDWKFV 456
Fly 457 SMVLDRFFLWLFTLSCVFGTLAIICQSPSLYDTRS 491 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta2 | NP_524483.1 | LIC | 9..479 | CDD:273305 | 174/476 (37%) |
LGIC_ECD_nAChR_proto_alpha-like | 29..247 | CDD:349832 | 87/215 (40%) | ||
Chrna7 | NP_031416.3 | LIC | 4..490 | CDD:273305 | 175/480 (36%) |
Neur_chan_LBD | 26..230 | CDD:280998 | 86/213 (40%) | ||
Neur_chan_memb | 237..486 | CDD:280999 | 84/255 (33%) | ||
Essential for TMEM35A/NACHO-mediated proper subunit assembly and trafficking to cell membrane. /evidence=ECO:0000269|PubMed:32783947 | 260..267 | 3/6 (50%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |