Protein Alignment nAChRbeta2 and LOC100537401

DIOPT Version :9

• Sequence 1: NP_524483.1
• Gene: nAChRbeta2 / 42920
• FlyBaseID: FBgn0004118
• Length: 519
• Species: Drosophila melanogaster
• Sequence 2: XP_021333008.1
• Gene: LOC100537401 / 100537401
• -ID: -
• Length: 416
• Species: Danio rerio
• Alignment Length: 321
• Identity: 147/321 - (45%)
• Similarity: 200/321 - (62%)
• Gaps: 31/321 - (9%)

  Fly   106 VPSEHIWVPDIVLYNNWDGNYEVTLMTKATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFM 170
            :|::.||.||||||||.||::.||.:|||.|.:.|.|.|.|||||||||.::|.:.|:|:|.|.:
Zfish     3 IPAQFIWKPDIVLYNNADGDFTVTHLTKAHLLHDGRVTWIPPAIYKSSCSIDVTFLPFDQQNCTI 67

  Fly   171 KFGSWTYNGAQVDLKHLDQIPGSNLVQVGIDLTEFYLSVEWDILEVPATKNEEYYPDTLEPFSDI 235
            |||||||:.:::||..:..         .:|..:::.|.||.|....||.|.:.|....|.::||
Zfish    68 KFGSWTYDRSKIDLIRIAD---------SVDQLDYWESGEWLITSAVATYNVKKYECCSEEYADI 123

  Fly   236 TFKLTMRRKTLFYTVNLIVPCVALTFLTVLVFYLPSDSGEKVTLCISILVSLTVFFLLLAEIIPP 300
            |:...:||..||||:|||:||:.:..|||||||||||.||:||:|||:|:|||||.||:.|||||
Zfish   124 TYSFIIRRLPLFYTINLIIPCLLILCLTVLVFYLPSDCGEEVTMCISVLLSLTVFLLLITEIIPP 188

  Fly   301 TSLAVPLLGKYLLFTMILVSLSVWTTVCVLNIHFRSPSTHNMSPLVRKLFLHFMPKLMMMRRTQY 365
            |||.:||:.:||||.||.:.|.:..||.|||:|.|||.||:|...||:.||..||:.:.::|.|.
Zfish   189 TSLVIPLIAEYLLFIMIFIILFIIITVFVLNVHHRSPDTHSMPQWVRRFFLDVMPRFIFIQRPQI 253

  Fly   366 TLPD----YDDSTPSN------GYTNEIDVRDSI----------SDFPSEFKDSQDGAYDN 406
            ...|    .||:..||      .:.|.....:||          :|..|....||  ||:|
Zfish   254 WQKDAKGVCDDAQKSNKRCVDSNWKNREIKEESIRMKVYSSCLNADMHSIKSPSQ--AYNN 312

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nAChRbeta2	NP_524483.1	LIC	9..479	CDD:273305	147/321 (46%)
		LGIC_ECD_nAChR_proto_alpha-like	29..247	CDD:349832	60/140 (43%)
LOC100537401	XP_021333008.1	Neur_chan_LBD	<2..>252	CDD:332142	131/257 (51%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D188416at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	1.010