DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRbeta2 and chrna2

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_004914998.2 Gene:chrna2 / 100495873 XenbaseID:XB-GENE-1013893 Length:510 Species:Xenopus tropicalis


Alignment Length:514 Identity:231/514 - (44%)
Similarity:317/514 - (61%) Gaps:62/514 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SLLC---VFLLVPLANSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQL 66
            |:||   .|..|.....|...:.|      ||:..|.:.|||..|||.|.::.:.|..||.::||
 Frog    10 SILCWMITFTTVSCMERTRTHAEE------RLFKRLFTGYNRWSRPVPNTSDVVIVKFGLSIAQL 68

  Fly    67 IEVNLKNQVMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLM 131
            |:|:.|||:||||:|:||.|.||||||:|.:|..|..:.||||.||:||||||||.||.:.:|.|
 Frog    69 IDVDEKNQMMTTNVWLKQEWNDYKLRWNPADYDNVTSIRVPSEMIWIPDIVLYNNADGEFAITHM 133

  Fly   132 TKATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLV 196
            |||.|.:.|:|.|.|||||||||.::|.:||:|:|.|.||||||||:.|.:||:.:::       
 Frog   134 TKAHLFHNGKVKWVPPAIYKSSCSIDVTFFPFDQQSCKMKFGSWTYDKAWLDLESMER------- 191

  Fly   197 QVGIDLTEFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTF 261
              .:||.:::.|.||.|:......|.:.|....|.:.|||:...:||..||||:|||:||:.::.
 Frog   192 --NVDLKDYWESGEWAIVNAVGKYNSKKYDCCTEIYPDITYYFIIRRLPLFYTINLIIPCLLISC 254

  Fly   262 LTVLVFYLPSDSGEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTT 326
            |||||||||||.|||:|||||:|:|||||.||:.||||.|||.:||:|:|||||||.|:||:..|
 Frog   255 LTVLVFYLPSDCGEKITLCISVLLSLTVFLLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVIT 319

  Fly   327 VCVLNIHFRSPSTHNMSPLVRKLFLHFMPKLMMMRR---------TQYTLPDYDDSTPSNGYTNE 382
            |.|||:|.||||||.|...||.:||..:|:.:.|:|         :||..|:...||  :.|..|
 Frog   320 VFVLNVHHRSPSTHKMPLWVRSVFLDHIPRWLFMKRPPAPVEEVVSQYDAPELKLST--SKYWME 382

  Fly   383 IDVRDSISDFPSEFK-----------DSQDGAYD-----NGMQNSVDSDNVIPRN---------- 421
            .||.|..::..:|.:           .|....||     :|.|:..      ||:          
 Frog   383 TDVDDKWAEPEAELQTCHVRHMTTHNQSLQYRYDYNHHVSGGQSQT------PRHSSTETAESSF 441

  Fly   422 -LTPEVLQALRAVRFIAQHIKDADKDNEIVEDWKFVSMVLDRFFLWLFTLSCVFGTLAI 479
             |:|.||:||..|.:||.|::..|.|..:.||||:|:||:||.|||:|.:.|:.||:.:
 Frog   442 LLSPSVLKALEGVHYIANHLRAEDADFSVKEDWKYVAMVIDRIFLWMFIIVCLLGTVGL 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 228/505 (45%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 102/217 (47%)
chrna2XP_004914998.2 LIC 9..503 CDD:273305 231/514 (45%)
LGIC_ECD_nAChR_A2 32..238 CDD:349816 103/220 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 252 1.000 Domainoid score I2037
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 477 1.000 Inparanoid score I1443
OMA 1 1.010 - - QHG45250
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 1 1.000 - - FOG0000583
OrthoInspector 1 1.000 - - mtm14085
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X294
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.980

Return to query results.
Submit another query.