DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta2 and chrna9

DIOPT Version :9

Sequence 1:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster
Sequence 2:XP_012811629.2 Gene:chrna9 / 100493319 XenbaseID:XB-GENE-983401 Length:494 Species:Xenopus tropicalis


Alignment Length:502 Identity:180/502 - (35%)
Similarity:279/502 - (55%) Gaps:44/502 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLCVFLLVPLANSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEVN 70
            |..||:|:.|..    :........:.|:.||..:|:..:|||.:..:.|.|.|.:.|||:.:|:
 Frog    12 LFHVFVLLDLKG----VESAKGKYAQMLFRDLFEDYSNALRPVEDTDKALNVSLQITLSQIKDVD 72

  Fly    71 LKNQVMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKAT 135
            .:||::|..||::..|:|..|:||.:||.|::.:.:||..:|.|||||||..|..:...:.|...
 Frog    73 ERNQILTAYLWIRLSWYDAYLKWDRDEYDGLDSIRIPSNMVWRPDIVLYNKADDEFSEPVNTNVV 137

  Fly   136 LKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVGI 200
            |:|.|::.|:.|||.||||.::|.|||:|.|.|.:.||||||||.|||:        .|.:..| 
 Frog   138 LRYDGKITWDSPAITKSSCVVDVSYFPFDNQQCNLTFGSWTYNGNQVDI--------INTMDSG- 193

  Fly   201 DLTEFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVL 265
            ||::|..:|||::..:||.||...|....||:.||||.|.::|::.||..||::|||.::||..|
 Frog   194 DLSDFVENVEWEMQGMPAVKNVITYGCCSEPYPDITFTLILKRRSSFYIFNLLIPCVMISFLAPL 258

  Fly   266 VFYLPSDSGEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTVCVL 330
            .||||:||||||:|.:::|::||||.|::||.:|| |.:|||:|||.:.||.:::.|...|:.::
 Frog   259 GFYLPADSGEKVSLGVTVLLALTVFQLMVAESMPP-SESVPLIGKYYIATMTMITASTALTIIIM 322

  Fly   331 NIHFRSPSTHNMSPLVRKLFLHFMPKLMMMRRT--QYTLPDYDDSTPSNGYTNEIDVRDSISDFP 393
            |||...|....:....|.:.|.:|.|:..:...  ..|.|..|..|.|||..      .|..|:.
 Frog   323 NIHLCGPEAKPIPRWARIVILDYMSKIFFVYDVGENCTSPQSDSDTKSNGSV------PSYEDYE 381

  Fly   394 SEFKD-SQDGAYDNGMQN-SVDSDNVIPRN--------LTPEVLQA--------LRAVRFIAQHI 440
            .|.:. |..|...:|..| |.|.|.....|        |..|:.:.        .|.:....::|
 Frog   382 KEQEPYSSLGCPLSGSGNFSCDIDTNKKLNGHLGGHYALQKEISETHCCAHCNRYRVLTNNIEYI 446

  Fly   441 KDADKDNEIVE----DWKFVSMVLDRFFLWLFTLSCVFGTLAIICQS 483
            .:..::.:.:.    :||.|:.|:||||:|:|.....|.::.||.|:
 Frog   447 TNWYREQKAISAKGIEWKKVAKVMDRFFMWVFFSMVFFMSILIIAQA 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 176/493 (36%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 89/217 (41%)
chrna9XP_012811629.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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