Protein Alignment nAChRbeta2 and si:ch211-256e16.4

DIOPT Version :9

• Sequence 1: NP_524483.1
• Gene: nAChRbeta2 / 42920
• FlyBaseID: FBgn0004118
• Length: 519
• Species: Drosophila melanogaster
• Sequence 2: XP_017210328.1
• Gene: si:ch211-256e16.4 / 100333796
• ZFINID: ZDB-GENE-131121-267
• Length: 179
• Species: Danio rerio
• Alignment Length: 105
• Identity: 27/105 - (25%)
• Similarity: 61/105 - (58%)
• Gaps: 6/105 - (5%)

  Fly   225 YPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVLVFYLPSDSGEKVTLCISILVSLTV 289
            |.|.|      .:::|::|:.|.:.:|:|:|......|.|..:::.:|..:|::..:::|::::|
Zfish     4 YADQL------IYQITIKRRPLLHVINIILPVFFFLVLDVTSYFIDTDGADKLSFKVTLLLAISV 62

  Fly   290 FFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTVCV 329
            ..|:|.:.:|.|:..:||:|.|......|:.:|:..|:.|
Zfish    63 LLLILNDTLPSTTYELPLIGIYCSAIFSLIGISILETILV 102

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nAChRbeta2	NP_524483.1	LIC	9..479	CDD:273305	27/105 (26%)
		LGIC_ECD_nAChR_proto_alpha-like	29..247	CDD:349832	5/21 (24%)
si:ch211-256e16.4	XP_017210328.1	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910