Sequence 1: | NP_524482.1 | Gene: | nAChRalpha2 / 42919 | FlyBaseID: | FBgn0000039 | Length: | 576 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_071525.1 | Gene: | Htr3b / 58963 | RGDID: | 61820 | Length: | 437 | Species: | Rattus norvegicus |
Alignment Length: | 398 | Identity: | 104/398 - (26%) |
---|---|---|---|
Similarity: | 181/398 - (45%) | Gaps: | 43/398 - (10%) |
- Green bases have known domain annotations that are detailed below.
Fly 27 CLLLVLLLLCETVQANP---DAKRLYDDLLSNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKD 88
Fly 89 QILTTNVWLEHEWQDHKFKWDPSEYGGVTELYVPSEHIWLPDIVLYNNADGE------YVVTTMT 147
Fly 148 KAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQIDLKHISQKNDKDNKV 212
Fly 213 EIGIDLREYYPSVEWDILGVPAERHEKYYPCCAEPYPDIFFNITLRRKTLFYTVNLIIPCVGISY 277
Fly 278 LSVLVFYLPADSGEKIALCISILLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMLLVGLSVVIT 342
Fly 343 IIILNIHYRKPSTHKMRP--WIRSFFIKRLPKLLLM---------------RVPKDLLRD--LAA 388
Fly 389 NKINYGLK 396 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha2 | NP_524482.1 | LGIC_ECD_nAChR_proto_alpha-like | 44..263 | CDD:349832 | 62/224 (28%) |
LIC | 47..544 | CDD:273305 | 99/375 (26%) | ||
Htr3b | NP_071525.1 | LIC | 30..431 | CDD:273305 | 99/375 (26%) |
Neur_chan_LBD | 30..233 | CDD:280998 | 60/217 (28%) | ||
Neur_chan_memb | 242..>313 | CDD:280999 | 18/70 (26%) | ||
HA-stretch | 377..409 | 3/13 (23%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |