DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha2 and nAChRbeta2

DIOPT Version :9

Sequence 1:NP_524482.1 Gene:nAChRalpha2 / 42919 FlyBaseID:FBgn0000039 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster


Alignment Length:555 Identity:286/555 - (51%)
Similarity:374/555 - (67%) Gaps:64/555 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 IWRHCKPLCLLLVLLLLCETV----QANPDAKRLYDDLLSNYNRLIRPVSNNTDTVLVKLGLRLS 79
            :| |...||:.|::.|...|.    :||||.||||||||||||||||||.|||:|:.|.|||:||
  Fly     1 MW-HWSLLCVFLLVPLANSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLS 64

  Fly    80 QLIDLNLKDQILTTNVWLEHEWQDHKFKWDPSEYGGVTELYVPSEHIWLPDIVLYNNADGEYVVT 144
            |||::|||:|::|||:|::..|.|:|.:|||.|||||.:|||||||||:||||||||.||.|.||
  Fly    65 QLIEVNLKNQVMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVT 129

  Fly   145 TMTKAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQIDLKHISQKNDKD 209
            .||||.|.|||:|.|.||||:|||||::|.|||:|:|.||||||||||:|.|:||||:.| ....
  Fly   130 LMTKATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQ-IPGS 193

  Fly   210 NKVEIGIDLREYYPSVEWDILGVPAERHEKYYPCCAEPYPDIFFNITLRRKTLFYTVNLIIPCVG 274
            |.|::||||.|:|.|||||||.|||.::|:|||...||:.||.|.:|:||||||||||||:|||.
  Fly   194 NLVQVGIDLTEFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVA 258

  Fly   275 ISYLSVLVFYLPADSGEKIALCISILLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMLLVGLSV 339
            :::|:|||||||:|||||:.||||||:|.|:||||::||||.||||:|||||||||||:||.|||
  Fly   259 LTFLTVLVFYLPSDSGEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSV 323

  Fly   340 VITIIILNIHYRKPSTHKMRPWIRSFFIKRLPKLLLMRVPKDLLRDLAANKINYGLKFSKTKFGQ 404
            ..|:.:||||:|.||||.|.|.:|..|:..:|||::||                     :|::..
  Fly   324 WTTVCVLNIHFRSPSTHNMSPLVRKLFLHFMPKLMMMR---------------------RTQYTL 367

  Fly   405 ALMDEMQMNSGGSSPDSLRRMQGRVGAGGCNGMHVTTATNRF-----SGLVGALGGGLSTLSGYN 464
            ...|:       |:|.:          |..|.:.|..:.:.|     ....||...|:.     |
  Fly   368 PDYDD-------STPSN----------GYTNEIDVRDSISDFPSEFKDSQDGAYDNGMQ-----N 410

  Fly   465 GLPSVLSGLDDSLSDVAARKKYPFELEKAIHNVMFIQHHMQRQDEFNAEDQDWGFVAMVMDRLFL 529
            .:.|         .:|..|...| |:.:|:..|.||..|::..|:.|...:||.||:||:||.||
  Fly   411 SVDS---------DNVIPRNLTP-EVLQALRAVRFIAQHIKDADKDNEIVEDWKFVSMVLDRFFL 465

  Fly   530 WLFMIASLVGTFVILGEAPSLYDDTKAIDVQLSDV 564
            |||.::.:.||..|:.::|||||....||.|||::
  Fly   466 WLFTLSCVFGTLAIICQSPSLYDTRSPIDRQLSEI 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha2NP_524482.1 LGIC_ECD_nAChR_proto_alpha-like 44..263 CDD:349832 147/218 (67%)
LIC 47..544 CDD:273305 263/501 (52%)
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 271/523 (52%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 147/218 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 250 1.000 Domainoid score I2065
eggNOG 1 0.900 - - E1_KOG3645
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 473 1.000 Inparanoid score I1461
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 1 1.000 - - FOG0000583
OrthoInspector 1 1.000 - - mtm6399
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X294
98.970

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