Sequence 1: | NP_524482.1 | Gene: | nAChRalpha2 / 42919 | FlyBaseID: | FBgn0000039 | Length: | 576 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_502905.2 | Gene: | lgc-19 / 190895 | WormBaseID: | WBGene00013655 | Length: | 400 | Species: | Caenorhabditis elegans |
Alignment Length: | 355 | Identity: | 77/355 - (21%) |
---|---|---|---|
Similarity: | 148/355 - (41%) | Gaps: | 76/355 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 46 KRLYDDLLSNYNRLIRPVSNNTDTVL-------------VKLGLRLSQLIDLNLKDQILTTNVWL 97
Fly 98 EHEWQDHKFKWDPSEYGGVTELYVPSEHIWLP--------DIVLYNNADGEYVVTTMTKAILHYT 154
Fly 155 GKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQIDLKHISQKNDKDNKVEIGIDLR 219
Fly 220 EYYPSV------------EWDILGVPAERHEKYYPCCAEPYPD-------IFFNITLRRKTLFYT 265
Fly 266 VNLIIPCVGISYLSVL-VFYLPADSGEKIALCISILLSQTMFFLLISEIIPSTSLALPLLGKYLL 329
Fly 330 FTMLLVGLSVVITIIILNIHYRKPSTHKMR 359 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha2 | NP_524482.1 | LGIC_ECD_nAChR_proto_alpha-like | 44..263 | CDD:349832 | 53/256 (21%) |
LIC | 47..544 | CDD:273305 | 77/354 (22%) | ||
lgc-19 | NP_502905.2 | LGIC_ECD_cation | 75..257 | CDD:349790 | 46/213 (22%) |
LGIC_TM_cation | 259..>346 | CDD:349853 | 20/89 (22%) | ||
TM1 helix | 263..284 | CDD:349853 | 5/20 (25%) | ||
TM2 helix | 292..313 | CDD:349853 | 1/20 (5%) | ||
TM3 helix | 323..346 | CDD:349853 | 3/24 (13%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |