DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha2 and lgc-19

DIOPT Version :9

Sequence 1:NP_524482.1 Gene:nAChRalpha2 / 42919 FlyBaseID:FBgn0000039 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_502905.2 Gene:lgc-19 / 190895 WormBaseID:WBGene00013655 Length:400 Species:Caenorhabditis elegans


Alignment Length:355 Identity:77/355 - (21%)
Similarity:148/355 - (41%) Gaps:76/355 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 KRLYDDLLSNYNRLIRPVSNNTDTVL-------------VKLGLRLSQLIDLNLKDQILTTNVWL 97
            :.|...:..:|:..:.||....|..|             ..:.|...:|:::....:.::..:.:
 Worm    35 RNLTKHIFRDYDPTVSPVYTWVDVDLPIGYDNEAPKRYNYTIFLYYLKLVEVQEPQEKISVVMEI 99

  Fly    98 EHEWQDHKFKWDPSEYGGVTELYVPSEHIWLP--------DIVLYNNADGEYVVTTMTKAILHYT 154
            ...|.|.:..|:.|.:...|.:|:..:.:|.|        |||.:.:.|...:....|..|..|.
 Worm   100 MEYWYDARLSWNASAWQNTTMIYMKQDKVWSPTISVFGVNDIVDFRDNDNRLICIENTGFIWDYV 164

  Fly   155 GKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQIDLKHISQKNDKDNKVEIGIDLR 219
            ...|       .::||:||..||||.|.|.::|....:...|:|:                  |.
 Worm   165 SVRV-------SANCEMDVSRFPFDTQICQIRFCLPIFYRVQVDI------------------LN 204

  Fly   220 EYYPSV------------EWDILGVPAERHEKYYPCCAEPYPD-------IFFNITLRRKTLFYT 265
            |.|..:            ||.:|.: ..|.|      |..|.|       ..|.||:||..|:|.
 Worm   205 EIYEEIMDERIFKTMGNSEWKLLNL-TNRVE------ALVYNDNMGTMDLAIFEITIRRNPLYYI 262

  Fly   266 VNLIIPCVGISYLSVL-VFYLPADSGEKIALCISILLSQTMFFLLISEIIPSTSLALPLLGKYLL 329
            ..::.|...|:::|:: ||...||...::.:.::.:::.|....::::.||.|. .:||||.|::
 Worm   263 YMIVFPSFIINFVSIVGVFLNGADKMSRLNVGLTNIMTMTFILGVMADKIPRTG-NIPLLGIYII 326

  Fly   330 FTMLLVGLSVVITIIILNIHYRKPSTHKMR 359
            ..::::.:::.|...|..:  ||.::.|:|
 Worm   327 INLVIMLIAIAIVTAITEL--RKWASPKLR 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha2NP_524482.1 LGIC_ECD_nAChR_proto_alpha-like 44..263 CDD:349832 53/256 (21%)
LIC 47..544 CDD:273305 77/354 (22%)
lgc-19NP_502905.2 LGIC_ECD_cation 75..257 CDD:349790 46/213 (22%)
LGIC_TM_cation 259..>346 CDD:349853 20/89 (22%)
TM1 helix 263..284 CDD:349853 5/20 (25%)
TM2 helix 292..313 CDD:349853 1/20 (5%)
TM3 helix 323..346 CDD:349853 3/24 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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