Sequence 1: | NP_524482.1 | Gene: | nAChRalpha2 / 42919 | FlyBaseID: | FBgn0000039 | Length: | 576 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001256671.1 | Gene: | lgc-31 / 184752 | WormBaseID: | WBGene00008997 | Length: | 675 | Species: | Caenorhabditis elegans |
Alignment Length: | 556 | Identity: | 135/556 - (24%) |
---|---|---|---|
Similarity: | 236/556 - (42%) | Gaps: | 100/556 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 43 PDAKRLYDDLLSNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKDQILTTNVWLEHEWQDHKFK 107
Fly 108 WDPSEYGGVTELYVPSEHIWLPDIVLYN--NADGEYVVTTMTKAILHYTGKVVWTPPAIFKSSCE 170
Fly 171 IDVRYFPFDQQTCFMKFGSWTYDGDQIDLKHISQKNDKDNKVEIGIDLREYYPSVEWDILGVPAE 235
Fly 236 RHEK-------YYPCCAEP--YPDIFFNITLRRKTLFYTVNLIIPCVGISYLSVLVFYLPADSGE 291
Fly 292 ----KIALCISILLSQTMFFLLISEIIPSTSL-----------ALPLLGKYLLFTMLLVGLSVVI 341
Fly 342 TIIILNIHYRKPSTHKMR-PWIRSFF------------IKRLPKLLLMRVPKDLLRDLAANKINY 393
Fly 394 GLKFSKTKFGQALMDEMQMNSGGSSPDSLRRMQGRVGAGGCNG-----------MHVTTATNRFS 447
Fly 448 GLVGALGGGLSTLSGYNGLPSVLSGLDDSLSDVAARKKYPFELEKAIHNVMFIQHHMQR---QDE 509
Fly 510 FNAEDQDWGFVAMVMDRL-FLWLFMIASLVGTFVIL 544 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha2 | NP_524482.1 | LGIC_ECD_nAChR_proto_alpha-like | 44..263 | CDD:349832 | 63/229 (28%) |
LIC | 47..544 | CDD:273305 | 133/550 (24%) | ||
lgc-31 | NP_001256671.1 | TM_EphA1 | <43..>79 | CDD:391457 | |
LGIC_ECD_cation | 153..339 | CDD:349790 | 52/200 (26%) | ||
LGIC_TM_cation | 341..>442 | CDD:349853 | 30/102 (29%) | ||
TM1 helix | 345..365 | CDD:349853 | 8/19 (42%) | ||
Neur_chan_memb | 347..634 | CDD:367256 | 68/317 (21%) | ||
TM2 helix | 377..398 | CDD:349853 | 7/20 (35%) | ||
TM3 helix | 420..442 | CDD:349853 | 5/23 (22%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |