DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha2 and lgc-10

DIOPT Version :9

Sequence 1:NP_524482.1 Gene:nAChRalpha2 / 42919 FlyBaseID:FBgn0000039 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_001293778.1 Gene:lgc-10 / 177409 WormBaseID:WBGene00022247 Length:450 Species:Caenorhabditis elegans


Alignment Length:415 Identity:101/415 - (24%)
Similarity:186/415 - (44%) Gaps:51/415 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LLVLLLLCETVQANPDAKRLYDDLLSNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKDQILTT 93
            |..|||:.||:..:.:...:.:|:...|:|.:.|....  .|||.:.:.|..||:|....|:...
 Worm    11 LFSLLLVNETMCVHNETSAILNDIFVGYDRRVLPFVQG--PVLVNMTIVLGILIELKENQQLAAY 73

  Fly    94 NVWLEHEWQDHKFKWDPSEYGGVTELYVPSEHIWLPDIVLYNNADGEYVVTTMTKAI-LHYTGKV 157
            .:.....|.|.:..||||:|.|..|:.||...:|:|.:.:||:.:.:.::|.....: |::.|::
 Worm    74 VISHTQRWYDGRLSWDPSKYRGQREVIVPQTMVWIPKLFVYNSLESKDMLTENRADVRLYHNGRI 138

  Fly   158 VWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQIDLKHISQKNDKDNKVEIGIDLREYY 222
            ....|...::.|.|....||||.|.|.:...|...:.:::.:.......|            .|:
 Worm   139 KINIPQYVQAICRIQTESFPFDCQFCAVALASPLLNVNEMVVNATQPPRD------------SYF 191

  Fly   223 P-SVEWDILGVPAERHEKYYPCCAEPYPDIFFNITLRRKTLFYTVNLIIPCVGISYLSVLVFYLP 286
            . :.||.:..|.. ||..:.. ..|...:|.:...|:|:.::|...::.|...||.||:|..:.|
 Worm   192 SGNAEWYLFNVTV-RHMTFEE-EGESRVEIHYVFHLQRRPIYYITVIVAPTFLISALSILGIFSP 254

  Fly   287 ADS----GEKIALCISILLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMLLVGLSVVITIIILN 347
            ..:    .||::|.:..||:.|:...:::..:|.:: .:||||.|:|..::|..::|.|:::.|.
 Worm   255 GSNDGPRNEKVSLGLGSLLAMTVLLGIVAGAMPKSN-DIPLLGYYILAVIVLCAVAVAISMMFLA 318

  Fly   348 I--HY----RKPSTHKMRPWIRSFFIKRLPKLLLMRVPKDLLRDLAANKINY-------GLKFSK 399
            :  ||    :.||             ||:.:.|.:...:.....:.....||       .|.:||
 Worm   319 VTRHYIQKEQMPS-------------KRILRFLFLHEYRKRRSTVFRGVHNYRFNQECDDLMYSK 370

  Fly   400 TKFGQALMDEMQMNSGGSSPDSLRR 424
            ....|::.  |.|.....|..|:||
 Worm   371 VPEIQSIC--MMMEEIADSHRSMRR 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha2NP_524482.1 LGIC_ECD_nAChR_proto_alpha-like 44..263 CDD:349832 51/220 (23%)
LIC 47..544 CDD:273305 95/397 (24%)
lgc-10NP_001293778.1 Neur_chan_LBD 28..229 CDD:280998 51/216 (24%)
Neur_chan_memb 236..>342 CDD:280999 31/119 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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