DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha2 and LOC100537401

DIOPT Version :9

Sequence 1:NP_524482.1 Gene:nAChRalpha2 / 42919 FlyBaseID:FBgn0000039 Length:576 Species:Drosophila melanogaster
Sequence 2:XP_021333008.1 Gene:LOC100537401 / 100537401 -ID:- Length:416 Species:Danio rerio


Alignment Length:443 Identity:161/443 - (36%)
Similarity:234/443 - (52%) Gaps:94/443 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 VPSEHIWLPDIVLYNNADGEYVVTTMTKAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFM 185
            :|::.||.|||||||||||::.||.:|||.|.:.|:|.|.||||:||||.|||.:.|||||.|.:
Zfish     3 IPAQFIWKPDIVLYNNADGDFTVTHLTKAHLLHDGRVTWIPPAIYKSSCSIDVTFLPFDQQNCTI 67

  Fly   186 KFGSWTYDGDQIDLKHISQKNDKDNKVEIGIDLREYYPSVEWDILGVPAERHEKYYPCCAEPYPD 250
            ||||||||..:|||..|:.          .:|..:|:.|.||.|....|..:.|.|.||:|.|.|
Zfish    68 KFGSWTYDRSKIDLIRIAD----------SVDQLDYWESGEWLITSAVATYNVKKYECCSEEYAD 122

  Fly   251 IFFNITLRRKTLFYTVNLIIPCVGISYLSVLVFYLPADSGEKIALCISILLSQTMFFLLISEIIP 315
            |.::..:||..||||:||||||:.|..|:|||||||:|.||::.:|||:|||.|:|.|||:||||
Zfish   123 ITYSFIIRRLPLFYTINLIIPCLLILCLTVLVFYLPSDCGEEVTMCISVLLSLTVFLLLITEIIP 187

  Fly   316 STSLALPLLGKYLLFTMLLVGLSVVITIIILNIHYRKPSTHKMRPWIRSFFIKRLPKLLLMRVPK 380
            .|||.:||:.:||||.|:.:.|.::||:.:||:|:|.|.||.|..|:|.||:..:|:.:.::.|:
Zfish   188 PTSLVIPLIAEYLLFIMIFIILFIIITVFVLNVHHRSPDTHSMPQWVRRFFLDVMPRFIFIQRPQ 252

  Fly   381 DLLRDLA-----ANKIN-------------------------------YGLKFSKTKFGQALMDE 409
            ...:|..     |.|.|                               :.:|.....:..:...:
Zfish   253 IWQKDAKGVCDDAQKSNKRCVDSNWKNREIKEESIRMKVYSSCLNADMHSIKSPSQAYNNSTCPK 317

  Fly   410 MQMNSGGSSPDSLRRMQGRVGAGGCN-------------GMH----VTTA---TNRFSGLVGALG 454
            |:::.|.|  .|::...|......||             .:|    .|:|   .::||.:...: 
Zfish   318 MKLHKGRS--QSVQVNCGERDVNLCNSSTRFRSRSMQYCSLHEHEQQTSAVFNADKFSNICKVM- 379

  Fly   455 GGLSTLSGYNGLPSVLSGLDDSLSDVAARKKYPFELEKAIHNVMFIQHHMQRQ 507
                |.:|.|  ||..:.|                   ||..|.:|..:::.|
Zfish   380 ----TSTGEN--PSHATRL-------------------AIEGVQYIAEYLRAQ 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha2NP_524482.1 LGIC_ECD_nAChR_proto_alpha-like 44..263 CDD:349832 69/141 (49%)
LIC 47..544 CDD:273305 161/443 (36%)
LOC100537401XP_021333008.1 Neur_chan_LBD <2..>252 CDD:332142 132/258 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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