DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha2 and chrna5

DIOPT Version :9

Sequence 1:NP_524482.1 Gene:nAChRalpha2 / 42919 FlyBaseID:FBgn0000039 Length:576 Species:Drosophila melanogaster
Sequence 2:XP_002937929.1 Gene:chrna5 / 100379824 XenbaseID:XB-GENE-5755296 Length:476 Species:Xenopus tropicalis


Alignment Length:560 Identity:205/560 - (36%)
Similarity:301/560 - (53%) Gaps:128/560 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAPGC----CTTRPRPIALLAHIWRHCKPLCLLLVLLL-----LCETVQANPDAK---RLYDDLL 53
            :.||.    |..:..|       |  |....|.|.|.|     .|...:.:..||   ||:..|.
 Frog     2 LLPGTEQKDCVIQRMP-------W--CAEYLLWLFLCLDILHGACGISEPSYIAKSEDRLFKYLF 57

  Fly    54 --SNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKDQILTTNVWLEHEWQDHKFKWDPSEYGGV 116
              .:|.|.:|||.:..|||.||.||.::||:|::.|:|::||||||:.||.|.|.:|||:|:.|:
 Frog    58 QQQDYQRWVRPVEHLNDTVKVKFGLAITQLVDVDEKNQLMTTNVWLKQEWVDVKLRWDPNEFAGI 122

  Fly   117 TELYVPSEHIWLPDIVLYNNADGEYVVTTMTKAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQ 181
            |.:.|||:.||:||||||:||||.: ..::|||::.|.|.:.|||||.:||||.|||.:||||.|
 Frog   123 TSIRVPSDSIWIPDIVLYDNADGRF-EGSVTKAVVRYDGTINWTPPANYKSSCTIDVTFFPFDLQ 186

  Fly   182 TCFMKFGSWTYDGDQIDLKHISQKNDKDNKVEIGIDLREYYPSVEWDILGVPAERHEKYYPCCAE 246
            .|.||||||||||.|:|:  |.:        :..:|.|:::.:.||:|:.....:..:...||..
 Frog   187 NCSMKFGSWTYDGSQVDI--ILE--------DYHVDKRDFFDNGEWEIVNATGNKGNRTDGCCFY 241

  Fly   247 PYPDIFFNITLRRKTLFYTVNLIIPCVGISYLSVLVFYLPADSGEKIALCISILLSQTMFFLLIS 311
            ||  |.::..::|..||||:.|||||:|:|:|::||||||::.||||:||.|:|:|.|:|.|:|.
 Frog   242 PY--ITYSFIIKRLPLFYTLFLIIPCIGLSFLTILVFYLPSNEGEKISLCTSVLVSLTVFLLVIE 304

  Fly   312 EIIPSTSLALPLLGKYLLFTMLLVGLSVVITIIILNIHYRKPSTHK-MRPWIRSFFIKRLPKLLL 375
            |||||:|..:||:|:||:|||:.|.||:|:|:..:|||.|..:||. |.||:|..|:.:|||||.
 Frog   305 EIIPSSSKVIPLIGEYLVFTMIFVTLSIVLTVFAINIHNRSSATHNAMAPWVRKIFLHKLPKLLC 369

  Fly   376 MR--VPKDLLRDLAANKINYGLKFSKTKFGQALMDEMQMNSGGSSPDSLRRMQGRVGAGGCNGMH 438
            ||  |.:...|.....|:.                         .|:|.|.              
 Frog   370 MRSHVDRYFTRKDETGKVR-------------------------GPESSRN-------------- 395

  Fly   439 VTTATNRFSGLVGALGGGLSTLSGYNGLPSVLSGLDDSLSDVAARKKYPFELEKAIHNVMFIQHH 503
                                                              .||.|:.::.:|..|
 Frog   396 --------------------------------------------------TLEAALDSIRYITRH 410

  Fly   504 MQRQDEFNAEDQDWGFVAMVMDRLFLWLFMIASLVGTFVI 543
            :.::.|.....:||.|||.|:||:|||.|::.|::|:..:
 Frog   411 VMKEHEVQEVVEDWKFVAQVLDRMFLWTFLLVSVIGSLFL 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha2NP_524482.1 LGIC_ECD_nAChR_proto_alpha-like 44..263 CDD:349832 100/223 (45%)
LIC 47..544 CDD:273305 192/502 (38%)
chrna5XP_002937929.1 LIC 19..453 CDD:273305 200/534 (37%)
LGIC_ECD_nAChR_A5 47..255 CDD:349819 99/220 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 252 1.000 Domainoid score I2037
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.