Sequence 1: | NP_524482.1 | Gene: | nAChRalpha2 / 42919 | FlyBaseID: | FBgn0000039 | Length: | 576 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002937929.1 | Gene: | chrna5 / 100379824 | XenbaseID: | XB-GENE-5755296 | Length: | 476 | Species: | Xenopus tropicalis |
Alignment Length: | 560 | Identity: | 205/560 - (36%) |
---|---|---|---|
Similarity: | 301/560 - (53%) | Gaps: | 128/560 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MAPGC----CTTRPRPIALLAHIWRHCKPLCLLLVLLL-----LCETVQANPDAK---RLYDDLL 53
Fly 54 --SNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKDQILTTNVWLEHEWQDHKFKWDPSEYGGV 116
Fly 117 TELYVPSEHIWLPDIVLYNNADGEYVVTTMTKAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQ 181
Fly 182 TCFMKFGSWTYDGDQIDLKHISQKNDKDNKVEIGIDLREYYPSVEWDILGVPAERHEKYYPCCAE 246
Fly 247 PYPDIFFNITLRRKTLFYTVNLIIPCVGISYLSVLVFYLPADSGEKIALCISILLSQTMFFLLIS 311
Fly 312 EIIPSTSLALPLLGKYLLFTMLLVGLSVVITIIILNIHYRKPSTHK-MRPWIRSFFIKRLPKLLL 375
Fly 376 MR--VPKDLLRDLAANKINYGLKFSKTKFGQALMDEMQMNSGGSSPDSLRRMQGRVGAGGCNGMH 438
Fly 439 VTTATNRFSGLVGALGGGLSTLSGYNGLPSVLSGLDDSLSDVAARKKYPFELEKAIHNVMFIQHH 503
Fly 504 MQRQDEFNAEDQDWGFVAMVMDRLFLWLFMIASLVGTFVI 543 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha2 | NP_524482.1 | LGIC_ECD_nAChR_proto_alpha-like | 44..263 | CDD:349832 | 100/223 (45%) |
LIC | 47..544 | CDD:273305 | 192/502 (38%) | ||
chrna5 | XP_002937929.1 | LIC | 19..453 | CDD:273305 | 200/534 (37%) |
LGIC_ECD_nAChR_A5 | 47..255 | CDD:349819 | 99/220 (45%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 252 | 1.000 | Domainoid score | I2037 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.010 |