Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_476532.2 | Gene: | Chrna6 / 81721 | RGDID: | 69281 | Length: | 493 | Species: | Rattus norvegicus |
Alignment Length: | 540 | Identity: | 223/540 - (41%) |
---|---|---|---|
Similarity: | 325/540 - (60%) | Gaps: | 76/540 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 2 GSVLFAAVFIALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNL 66
Fly 67 KNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAIL 131
Fly 132 HHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVG-- 194
Fly 195 IDLQDYYISVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSV 259
Fly 260 LVFYLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAV 324
Fly 325 LNVNFRSPVTHRMAPWVQRLFIQILPKLLCIERP--KKEEPEEDQPPEVLTDVYHLPPDVDKFVN 387
Fly 388 YDSKRFSGDYGIPALPASHRFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFSPSGLNGDISPG 452
Fly 453 ----CCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVAMVLDR 513
Fly 514 MFLWIFAIACVVGTALIILQ 533 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 96/216 (44%) |
LIC | 27..530 | CDD:273305 | 215/510 (42%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 115/288 (40%) | ||
Chrna6 | NP_476532.2 | LIC | 34..483 | CDD:273305 | 215/514 (42%) |
LGIC_ECD | 34..240 | CDD:355788 | 96/216 (44%) | ||
Cys-loop | 158..172 | CDD:349787 | 7/13 (54%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 253 | 1.000 | Domainoid score | I1995 |
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 477 | 1.000 | Inparanoid score | I1422 |
OMA | 1 | 1.010 | - | - | QHG45250 | |
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000583 | |
OrthoInspector | 1 | 1.000 | - | - | mtm12327 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101158 | |
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X294 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
13 | 12.880 |