DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and LOC798522

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:XP_001338964.6 Gene:LOC798522 / 798522 -ID:- Length:488 Species:Danio rerio


Alignment Length:546 Identity:185/546 - (33%)
Similarity:285/546 - (52%) Gaps:80/546 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGSVLFAAVFI--ALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLID 63
            |..:|.:|:.:  |.|.|.|..|:    :|.:||:.:|:..:|||.:....|.|.:.:.|||:.|
Zfish     8 MEVMLLSALLLAEASHCAQGRFAH----KLLNDLMEDYSSALRPVDDTDKSLNVTLQVTLSQIKD 68

  Fly    64 VNLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTK 128
            ::.:||::...:|:.|.|:|..|||:.:||.|::.:.:||..||.||:||||.||.::...:.|.
Zfish    69 MDERNQVLIAYLWIRQVWHDAHLKWSKEDYDGLEVIRIPSSLIWRPDLVLYNKADDDFSGPVDTN 133

  Fly   129 AILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEV 193
            .:|.:||::.|..|||.||.|.:||.|||||.|.|.:.||||||:|..||            |.:
Zfish   134 VVLRYTGEITWDAPAITKSSCVVDVSYFPFDSQQCNLTFGSWTYNGNQVD------------IAM 186

  Fly   194 GI---DLQDYYISVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGIS 255
            |.   ||.|:..:|||:...:||.:|...|.||.:||.||.:.:.|:|::.||.:||::||..||
Zfish   187 GSVSGDLSDFVENVEWECHGMPATKNVIMYGCCSDPYPDITYTVLLQRRSSFYIINLLLPCFLIS 251

  Fly   256 FLSVLVFYLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVV 320
            ||:.|.||||:|||||:||.:::||:||||.:::||.:|| |.:|||:.||.:.||.::|.|..:
Zfish   252 FLAPLSFYLPADSGEKVSLGVTVLLALTVFQMMVAESMPP-SESVPLIAKYYIATMTMITASTAL 315

  Fly   321 TIAVLNVNFRSPVTHRMAPWVQRLFIQILPKLLCIERPKKEEPEEDQPPEVLTDVYHLPPDVDKF 385
            ||.::|::|.......:..|.:.|.|..:.|:..:    .|..|....|      :....:.:.|
Zfish   316 TIFIMNIHFCGAEAKPVPYWAKVLIIDYMSKIFFV----YEVGESCASP------FGQAEESESF 370

  Fly   386 VNYDSKRFSGDYGIPALPASHRFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFSPSGLNGDIS 450
            .:.:..|            .|:.. ...|.||    ..||       |...:|..||..|     
Zfish   371 HSQNHHR------------KHKLH-HPKGKIS----GSPP-------PCCPEDHKSPFVL----- 406

  Fly   451 PGC-----CPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVAMV 510
             ||     |...:...|.|             .|.:....:||...:.:........:||.||.|
Zfish   407 -GCESCVYCGFRSGNLACD-------------TKLLRNVEYIANCFREQKTTALKVAEWKKVAKV 457

  Fly   511 LDRMFLWIFAIACVVGTALIILQAPS 536
            :||.|:|||.|...:.:.|||.:||:
Zfish   458 MDRFFMWIFFIMVFLMSILIIGKAPT 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 86/217 (40%)
LIC 27..530 CDD:273305 172/510 (34%)
Neur_chan_memb 247..530 CDD:280999 83/287 (29%)
LOC798522XP_001338964.6 Neur_chan_LBD 32..477 CDD:332142 172/510 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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