DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and Htr3b

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_064670.1 Gene:Htr3b / 57014 MGIID:1861899 Length:437 Species:Mus musculus


Alignment Length:405 Identity:103/405 - (25%)
Similarity:179/405 - (44%) Gaps:58/405 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SVLFAAVFIALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLK 67
            |.|..||...|..||....|....||...||..|::.:|||.|.::..||.:.|.:..::||:::
Mouse     6 SCLLVAVVGILGTATPQPGNSSLHRLTRQLLQQYHKEVRPVYNWAEATTVYLDLCVHAVLDVDVQ 70

  Fly    68 NQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVL---------------YNNA 117
            ||.:.|:||..:.|||..|.||...:..:..:.:|...:|.|||::               |.|:
Mouse    71 NQKLKTSVWYREVWNDEFLSWNSSLFDEIQEISLPLSALWAPDIIINEFVDVERSPDLPYVYVNS 135

  Fly   118 DGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHL 182
            .|         .|.:|      ||..:. |.|.:....||||.|.|.:.|.|..:....:||..|
Mouse   136 SG---------TIRNH------KPIQVV-SACSLQTYAFPFDIQNCSLTFNSILHTVEDIDLGFL 184

  Fly   183 KQTADSDNIEVGIDLQDYYISVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNL 247
            :...|.:|     |.:.:....||.::.|.:..:.:..|..:  :..|.||:.:||..|.|.|:|
Mouse   185 RNREDIEN-----DKRAFMNDSEWQLLSVSSTYHIRQSSAGD--FAQIRFNVVIRRCPLAYVVSL 242

  Fly   248 IIPCVGISFLSVLVFYLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMM 312
            :||.:.:..:.:..||||.:...:|....::|:..|||.:.:::.:|.::...||:|.:....|.
Mouse   243 LIPSIFLMLVDLGSFYLPPNCRARIVFKTNVLVGYTVFRVNMSDEVPRSAGCTPLIGVFFTVCMA 307

  Fly   313 LVTLSVVVTIAVLNVNFRSPVTHRMAPWVQRLFIQILPKLLCIERPKKEE--------PEEDQPP 369
            |:.||:..:|.::...:....:.:..|            |:|::.....|        |..|...
Mouse   308 LLVLSLSKSILLIKFLYEERHSGQERP------------LMCLQGDSDAEESRLYLGAPRADVTE 360

  Fly   370 EVLTDVYHLPPDVDK 384
            ..:...:.:|.|..|
Mouse   361 SPVHQEHRVPSDTLK 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 62/229 (27%)
LIC 27..530 CDD:273305 95/381 (25%)
Neur_chan_memb 247..530 CDD:280999 30/146 (21%)
Htr3bNP_064670.1 LIC 30..431 CDD:273305 95/381 (25%)
Neur_chan_LBD 30..233 CDD:280998 60/225 (27%)
Neur_chan_memb 242..>313 CDD:280999 19/70 (27%)
HA-stretch 377..409
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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