DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha1 and chrna10a

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:XP_021337092.1 Gene:chrna10a / 556507 ZFINID:ZDB-GENE-060503-725 Length:532 Species:Danio rerio


Alignment Length:545 Identity:183/545 - (33%)
Similarity:288/545 - (52%) Gaps:78/545 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 AKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWN 89
            |::|.:||.:||...:|||.:..|.|.|.:.:.|||:||::.:|||:|..:|:.|.|.|..|.||
Zfish    30 AQKLLNDLFNNYTSALRPVEDTEDILNVTLQITLSQIIDMDERNQILTAYLWIRQVWIDKYLTWN 94

  Fly    90 PDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVE 154
            .::|.|:||:.:|..::|.|||||||:||.::..|:.|..::.|.|:::|..|||.||.|::||.
Zfish    95 KENYDGLDTIRIPGSYVWRPDIVLYNSADDHFTSTMDTNVVIRHDGQIMWDAPAITKSSCKVDVS 159

  Fly   155 YFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDLQDYYISVEWDIMRVPAVRNEKF 219
            :||||.|.|.:.:|||||:|..:|:.:..::|         ||.|...:|||:::.:||.||...
Zfish   160 FFPFDAQQCRLTYGSWTYNGNQLDILNAMESA---------DLADLVDNVEWEVLGMPAKRNIIL 215

  Fly   220 YSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKISLCISILLSLTV 284
            |.||.:||.|:.:.|.|:|:..||..||:||||.||||:.|.||||:|||||:||.::::|:|||
Zfish   216 YGCCADPYPDVTYTLKLKRRASFYVFNLLIPCVMISFLAPLGFYLPADSGEKVSLGVTVMLALTV 280

  Fly   285 FFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVQRLFIQIL 349
            |.||:|||:|| |..|||:|||.:.||.::|.|..:||.|:|::...|....:..|.::..:|.|
Zfish   281 FQLLVAEIMPP-SENVPLIGKYYIATMTMITASTALTIFVMNIHHCGPDAKPVPDWAKKFILQYL 344

  Fly   350 PKLLCI---------ERPKKEEPEEDQPPEVLTDVYHLPPDVDKFVNYDSKRFSGDYGIPALPAS 405
            .::..:         .:|:|.:|:..:|.             |...|.:.:....|:       .
Zfish   345 ARICFVYEVGENCMTPQPEKPDPQPQKPQ-------------DCNCNMNGQAGKDDF-------V 389

  Fly   406 HRFDLAAAGGISAHCFAEPPLPSSLPLPGADD--DLFSPSGLNGDISPGC--------------C 454
            .:||.....       ..|.|     |...:|  .:.||:...|. .|.|              |
Zfish   390 FKFDRNQEA-------TSPKL-----LEDREDMSQILSPACSLGK-HPTCRYGVWKEGVFMSMDC 441

  Fly   455 PAAAA----------AAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVAM 509
            ...||          ....|....|:.....:.:..:....::|...:::........:||.||.
Zfish   442 GDGAAETGKPIGRGQEGCRDHDSGFKSQCKCDQQHLLRNIEYVANCYRDQRATARRTGEWKKVAK 506

  Fly   510 VLDRMFLWIFAIACVVGTALIILQA 534
            ||||.|:|:|.|.....:.||:.:|
Zfish   507 VLDRFFMWLFFIMVFFMSLLIMGKA 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 89/214 (42%)
LIC 27..530 CDD:273305 179/537 (33%)
Neur_chan_memb 247..530 CDD:280999 88/317 (28%)
chrna10aXP_021337092.1 Neur_chan_LBD 31..422 CDD:332142 158/432 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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