DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and chrnd

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_996947.1 Gene:chrnd / 404273 ZFINID:ZDB-GENE-030131-6665 Length:518 Species:Danio rerio


Alignment Length:563 Identity:191/563 - (33%)
Similarity:294/563 - (52%) Gaps:77/563 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGSVLFAAVFIALHFATGGLANPDAKRLYDDLLS--NYNRLIRPVGNNSDRLTVKMGLRLSQLID 63
            |.:||..|..:...|......| :.:||.:.|..  .||:.:|||.|..:.:.:.:.|.||.||.
Zfish     2 MKTVLLTASLLCFIFQECCGRN-EEERLINYLFKERGYNKELRPVQNKDETVDIYLALTLSNLIS 65

  Fly    64 VNLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTK 128
            :...::.:.||||:|..|.|::|.||..:| .:..|.:|...:|||:|||.||.|..::|.....
Zfish    66 LKEVDETLLTNVWMEHGWKDHRLTWNESEY-DIPVLRLPPSMVWLPEIVLENNNDAQFQVAYYCN 129

  Fly   129 AILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSD---N 190
            .:::.:|.:.|.||||::|.|.|:|.|||||.|.|.:||.|.||:...:.| :||...::.   .
Zfish   130 VLIYSSGDMYWLPPAIFRSSCSINVNYFPFDWQNCSLKFSSLTYNAKEISL-NLKMEQENTTYYK 193

  Fly   191 IE-VGIDLQDYYISVEWDIMRVPAVRNEKFYSCC---EEPYLDIVFNLTLRRKTLFYTVNLIIPC 251
            :| :.||.:.:..:.||:|:..||.||  .|...   ...:.||.|.|.::||.|||.||:||||
Zfish   194 VEWIIIDPEGFTENGEWEIVHKPARRN--IYKSIPKESNKHQDITFYLIIKRKPLFYIVNIIIPC 256

  Fly   252 VGISFLSVLVFYLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTL 316
            |.||||:.||:|||:|||||::|.||:||:.:||.||:::.:|.||:.|||:.|||:|.|:|||:
Zfish   257 VLISFLASLVYYLPADSGEKMTLSISVLLAQSVFLLLISQRLPETSMAVPLIVKYLMFIMVLVTV 321

  Fly   317 SVVVTIAVLNVNFRSPVTHRMAPWVQRLFIQILPKLLCIERPKKEEPEEDQP-PEVLTDVYHLPP 380
            .|:..:.|||::||:|.||.|..|.:..|::.||:||.:..     |.|||| ||..     || 
Zfish   322 VVLNCVIVLNLHFRTPSTHVMTEWTKEFFLERLPRLLHMSL-----PVEDQPVPESA-----LP- 375

  Fly   381 DVDKFVNYDSKRFSGDYGIPALPASH-----RFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLF 440
                       |.|...|..|....:     |.:|........|..|..|.|.            
Zfish   376 -----------RRSSSLGYIAQAEEYYSVKSRSELMFEKQSERHGLAARPTPK------------ 417

  Fly   441 SPSGLNGDISPGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWK 505
                             |...:::.|...|:.| .||:..:||:.:|.:|:.:|:.:...:::|.
Zfish   418 -----------------ATYTSSNDSEVSEQLY-NEMKPAVEGANYIVKHMHDKNDYNEEKDNWS 464

  Fly   506 YVAMVLDRMFLWIFAIACVVGTALIIL-----QAPSLYDQSQP 543
            .:|..:||:..::.....::||..|.|     |.|:|..|..|
Zfish   465 GIARTVDRLCFYVVTPVMMIGTICIFLMANYNQPPALPFQGDP 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 78/223 (35%)
LIC 27..530 CDD:273305 178/517 (34%)
Neur_chan_memb 247..530 CDD:280999 94/288 (33%)
chrndNP_996947.1 LIC 6..493 CDD:273305 184/543 (34%)
Neur_chan_LBD 25..245 CDD:280998 78/223 (35%)
Neur_chan_memb 252..490 CDD:280999 94/289 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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