DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and SecCl

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster


Alignment Length:314 Identity:78/314 - (24%)
Similarity:129/314 - (41%) Gaps:43/314 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 YNRLIRPVGNNSD--RLTVKMGLRLSQLIDVNLKNQIM--TTNVWVEQEWNDYKLKW----NPDD 92
            |:||.||...:||  ||.:.:..|:......||.:.::  ..:..::..:.|.:|.:    ..|:
  Fly    57 YDRLERPFEYDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDN 121

  Fly    93 YGGVDTLHVPSEHIWLPDIVLYNNAD----GNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDV 153
            ..|...|   ||.:|||.|...|..:    |..|..::|.  |...|.|:.........:|.::.
  Fly   122 ILGQKHL---SERLWLPHIFFANERESSILGTDEKDVLTS--LSPEGNVIISTRMQASLYCWMNF 181

  Fly   154 EYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDLQDYYISVEW----------DI 208
            :.||||:|.|.....||.|:...:.|.....|..|.:.|  :.|.:|.::..|          |.
  Fly   182 QKFPFDQQFCSTVLESWMYNTSDLILEWEPHTPISFDPE--MRLTEYNMAQFWHNTTIVQSDGDN 244

  Fly   209 MRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSD-SGEKI 272
            :|..|....         |..:.|.:.|:|:..||.::..:|.:.|..:|.:.|:|.:| |..:|
  Fly   245 LRHGAFAGN---------YSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRI 300

  Fly   273 SLCISILLSLTVFFLLLAEIIPPTSL----TVPLLGKYLLFTMMLVTLSVVVTI 322
            .|..|.:||........::.:|..|.    .|..||........||..:.|.||
  Fly   301 MLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTI 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 54/225 (24%)
LIC 27..530 CDD:273305 78/314 (25%)
Neur_chan_memb 247..530 CDD:280999 22/81 (27%)
SecClNP_001261986.1 LIC 43..505 CDD:273305 78/314 (25%)
Neur_chan_LBD 44..267 CDD:280998 54/225 (24%)
Neur_chan_memb 275..503 CDD:280999 22/80 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447286
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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