| Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001261898.1 | Gene: | pHCl-1 / 39730 | FlyBaseID: | FBgn0264908 | Length: | 978 | Species: | Drosophila melanogaster |
| Alignment Length: | 162 | Identity: | 37/162 - (22%) |
|---|---|---|---|
| Similarity: | 60/162 - (37%) | Gaps: | 30/162 - (18%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 139 LTSPTLSSSVV--RPPNDEPQTLDLSIKKTPRTETMAVSAAPTKLTETSNNVSSV------TVYR 195
Fly 196 TDGTFSGPN----IPPSSTSAVGGG--TYVSYHPSGTGVSDAMGRTLTKSPSGTGA---AYLTIP 251
Fly 252 LGTGPGQNS-GGLSMQGSTGSTRQSTLSSLTP 282 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| nAChRalpha1 | NP_001262916.1 | LGIC_ECD_nAChR_proto_alpha-like | 24..242 | CDD:349832 | 27/116 (23%) |
| LIC | 27..530 | CDD:455710 | 37/162 (23%) | ||
| Cys-loop | 149..163 | CDD:349832 | 6/15 (40%) | ||
| pHCl-1 | NP_001261898.1 | LIC | 339..>662 | CDD:455710 | |
| LGIC_TM | <948..975 | CDD:476813 | |||
| TM4 helix | 950..971 | CDD:349850 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||