DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha1 and Rdl

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster


Alignment Length:336 Identity:80/336 - (23%)
Similarity:142/336 - (42%) Gaps:54/336 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 ATGG---LANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMG-----LRLSQLIDVNLKNQIMT 72
            ||||   |.:.:...:.|....:|::.:||   |.....|::|     |.:|.|.:|.:.   .|
  Fly    47 ATGGGSMLGDVNISAILDSFSVSYDKRVRP---NYGGPPVEVGVTMYVLSISSLSEVKMD---FT 105

  Fly    73 TNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSE---HIWLPDIVLYNNADGNYEVTIMTKAIL--H 132
            .:.:..|.|.|.:|.:....  ||:||.|.||   :||:||....|.....:.:...:...:  |
  Fly   106 LDFYFRQFWTDPRLAYRKRP--GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVH 168

  Fly   133 HTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDL 197
            |:|.:.........:.|.::::|||.|.|.|.::..|:.|.  |.|:|:..:...|   .||:..
  Fly   169 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYT--MRDIRYFWRDGLS---SVGMSS 228

  Fly   198 QDYYISVEWDIMRVPAVRNEKF--------YS--CCEEPYLDIVFNLTLRRKTLFYTVNLIIPCV 252
            :     ||....||...|....        ||  .||..::         |...:|.:.:.||..
  Fly   229 E-----VELPQFRVLGHRQRATEINLTTGNYSRLACEIQFV---------RSMGYYLIQIYIPSG 279

  Fly   253 GISFLSVLVFYLPSD-SGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYL--LFTMMLV 314
            .|..:|.:.|:|..: :..:::|.::.:|::|.........:|..|. |..:..||  .|.|:..
  Fly   280 LIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKSIDVYLGTCFVMVFA 343

  Fly   315 TLSVVVTIAVL 325
            :|....|:..:
  Fly   344 SLLEYATVGYM 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 56/234 (24%)
LIC 27..530 CDD:273305 75/322 (23%)
Neur_chan_memb 247..530 CDD:280999 18/82 (22%)
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 50/206 (24%)
Neur_chan_memb 274..588 CDD:397193 18/82 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447367
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

Return to query results.
Submit another query.