DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha1 and lgc-8

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001023533.2 Gene:lgc-8 / 3564870 WormBaseID:WBGene00013338 Length:438 Species:Caenorhabditis elegans


Alignment Length:340 Identity:84/340 - (24%)
Similarity:160/340 - (47%) Gaps:39/340 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 AKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWN 89
            :::|.|.|:..|:..||||.|..|.|.:.:.:.....:.::...:.:..:.....:|.|..|.||
 Worm    28 SEQLKDVLMEGYDSSIRPVINERDTLFINISINSMSFLTLDPAEETINFSGEFILQWKDEFLFWN 92

  Fly    90 PDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI-LHHTGKVVWKPPAIYKSFCEIDV 153
            ..|| .:..|.:....:|.||..:..:.|.||.:....:.: :.:.|.|.....|::.:.|::::
 Worm    93 KSDY-NITWLKLKESFLWTPDTTVSTSIDTNYLIETSERYVSVKYDGTVRQNIYAVFTNLCDMNI 156

  Fly   154 EYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDLQ------DYYISVEWDIMRVP 212
            ..||:|:|||.:|.|.|:|            |.......||.|::      .:..:.|||...:.
 Worm   157 NEFPYDQQTCMIKMGPWSY------------TMKEVTCIVGGDIERNETTGKFQGNSEWDFEGIV 209

  Fly   213 AVRNEKFYSCCEEP-----YLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDS---- 268
            :...|     .|:|     :.::.|.||::|:..||...|:||...|:.:.:...:.|:.:    
 Worm   210 SSVGE-----TEDPDVNFTFSEVHFALTVKRRPQFYVWVLLIPTYIITVVCIFGLFTPTANHGLR 269

  Fly   269 GEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPV 333
            .|:::|.|:.|||..|...::|..:|.|| .:||||.::|..:.:|.:.|:..:.||.::.|:..
 Worm   270 EERVNLGITTLLSSAVILQIVANAMPKTS-ELPLLGNFILAEIFVVAIGVLFAVLVLTLHQRAHT 333

  Fly   334 THRMAP----WVQRL 344
            .....|    |:.|:
 Worm   334 REWRPPAWMLWILRM 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 53/226 (23%)
LIC 27..530 CDD:273305 84/338 (25%)
Neur_chan_memb 247..530 CDD:280999 29/106 (27%)
lgc-8NP_001023533.2 Neur_chan_LBD 29..237 CDD:280998 53/225 (24%)
Neur_chan_memb 244..>348 CDD:280999 28/104 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.