DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and nAChRalpha7

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster


Alignment Length:541 Identity:208/541 - (38%)
Similarity:302/541 - (55%) Gaps:68/541 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 ANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYK 85
            |.|..|||...||.|||.|.|||.|.||.|.:..||.|.|:|||:.|||::.||:|::.||||..
  Fly    57 AGPHEKRLLHALLDNYNSLERPVVNESDPLQLSFGLTLMQIIDVDEKNQLLITNIWLKLEWNDMN 121

  Fly    86 LKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCE 150
            |:||..::|||..|.:|...:|.||:::||:||..::.|..|..::.:.|..::.||.|:||.|:
  Fly   122 LRWNSSEFGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYATNVVVRNNGSCLYVPPGIFKSTCK 186

  Fly   151 IDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDLQDYYISVEWDIMRVPAVR 215
            ||:.:||||:|.|.||||||||||:.:||    |..|    |.|.|:..:..:.|||::.||..|
  Fly   187 IDITWFPFDDQRCEMKFGSWTYDGFQLDL----QLQD----EAGGDISSFITNGEWDLLGVPGKR 243

  Fly   216 NEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKISLCISILL 280
            ||.:|:||.|||:||.|.:.:|||||:|..|||:|||.|:.:::|.|.||.|||||:||.::|||
  Fly   244 NEIYYNCCPEPYIDITFAILIRRKTLYYFFNLIVPCVLIASMALLGFTLPPDSGEKLSLGVTILL 308

  Fly   281 SLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVQRLF 345
            |||||..::||.:|.||..|||||.|....|.:|..|||.||.:||.:.|:|.||.|:.|::.:|
  Fly   309 SLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNPDTHEMSEWIRVIF 373

  Fly   346 IQILPKLLCIERP---------------------KKE-----EPEEDQPPEVLTDVYHLPPDVDK 384
            :..||.:|.::||                     ||:     |.:|.....:|.:|.    |:| 
  Fly   374 LYWLPCILRMQRPGQVGYECPPPPSSSSSSASGEKKQQIQNVELKERSSKSLLANVL----DID- 433

  Fly   385 FVNYDSKRFSGDYGIPALPASHRFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFSPSGLNGDI 449
                |..|           .:||    .|.....|   :|....::...| ||....|.|..|.:
  Fly   434 ----DDFR-----------CNHR----CASATLPH---QPTYYRTMYRQG-DDGSVGPVGPAGPV 475

  Fly   450 SPGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVAMVLDRM 514
            ..|....|.:......|..:      |:...::..|:|.:.:|.:|:...:..|||:.|||:||:
  Fly   476 VDGRLHEAISHTCLTSSAEY------ELALILKELRWITEQLKKEDETSDITRDWKFAAMVVDRL 534

  Fly   515 FLWIFAIACVVGTALIILQAP 535
            .|.||.:..::.|..::..||
  Fly   535 CLIIFTLFTIIATLAVLFSAP 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 101/214 (47%)
LIC 27..530 CDD:273305 203/528 (38%)
Neur_chan_memb 247..530 CDD:280999 98/308 (32%)
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:273305 204/530 (38%)
Neur_chan_LBD 61..268 CDD:280998 101/214 (47%)
Neur_chan_memb 275..552 CDD:280999 98/310 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447318
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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