DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and CG6927

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster


Alignment Length:613 Identity:131/613 - (21%)
Similarity:206/613 - (33%) Gaps:186/613 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LFAAVFIALHFATGGLANPDAKRLYD-DLLS------------NYNRLIRPV--GNNSDRLTVKM 54
            |..::.:...:|:....:.|...|.| |.||            .|:||.||:  .....||.|.:
  Fly     5 LIISILLNCLYASASALDEDCPTLDDGDSLSQTQLLDRLTHGCRYDRLERPITYSETGQRLPVDV 69

  Fly    55 GLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKW---NPDDYGGVDTLHVPSEH----IWLPD 110
            .:|.......||:...:...::  ::..:.|.:|.:   :|.....:    :..||    :|:|.
  Fly    70 YMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRLNFRNVSPKRRQPI----LGEEHLRNSLWMPH 130

  Fly   111 IVLYNNAD----GNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSW- 170
            |.|.|..|    |..|..|:|.  :...|.|:.........:|.::::.||||||.|.....|| 
  Fly   131 IFLANERDSSILGLTEKDILTS--ISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESWM 193

  Fly   171 ----------------TYDGYMVDLRHLKQTADSDNIEVGIDLQDYYISVEWDIMRVPAVRNEKF 219
                            ||||.:.....:.|.:.|:...:..||.|              :|:..|
  Fly   194 YNTSELVLHWEQKRPITYDGALHLTEFVLQRSWSNETVINADLSD--------------LRHGAF 244

  Fly   220 YSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSG-EKISLCISILLSLT 283
            ..    .|..:.|.:.|.|...||.::..:|.:.|..:|.:.|:|.:|.. .:|:|..|.||:  
  Fly   245 AG----NYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLT-- 303

  Fly   284 VFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVQRLFIQI 348
              |:.||.          ..||         ||..|..|.|..|.|...........|:..|:. 
  Fly   304 --FITLAS----------AQGK---------TLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVN- 346

  Fly   349 LPKLLCIERPKKEEP----------EEDQPPEVLTDVYHLPPDVDKFVNYDSKRFSGDYGIPALP 403
                 .|.|.||..|          :....|.:|....|.          .|:.|||       .
  Fly   347 -----TIWRRKKSVPVKKLNSKHILKSTLSPNLLRRRSHA----------RSRSFSG-------T 389

  Fly   404 ASHR-FDLAAAGGISAHCFAEPPLPSSLPLPG--ADDDLFSPSGLNGDI--------SPGCCPAA 457
            |.|: .|..:.||...:.:....||.:....|  .|....|......|:        |.|...:.
  Fly   390 ALHKTADTGSLGGAGFNNYLTVNLPITTIKEGQVLDQQRTSRVVQKMDVNFVESAFGSMGSAQST 454

  Fly   458 AAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESV---EE----DW-----KYVAMV 510
            .|.:||..|.|                      :.|.::.||.   ||    .|     :.:||.
  Fly   455 GAISAASSSQT----------------------LTNNNRTESAGHQEEIDLSGWTTLTPQEIAMW 497

  Fly   511 LD--------------RMFLWIFAIACV 524
            :|              .:|.|.| :.|:
  Fly   498 IDSRARFVFPLSFLVFNLFFWTF-VYCI 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 58/259 (22%)
LIC 27..530 CDD:273305 128/591 (22%)
Neur_chan_memb 247..530 CDD:280999 68/326 (21%)
CG6927NP_572194.1 LIC 3..520 CDD:273305 129/606 (21%)
Neur_chan_LBD 36..259 CDD:280998 52/246 (21%)
Neur_chan_memb 270..518 CDD:280999 65/315 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447287
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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