DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and Chrne

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:XP_017452660.1 Gene:Chrne / 29422 RGDID:2353 Length:547 Species:Rattus norvegicus


Alignment Length:525 Identity:173/525 - (32%)
Similarity:264/525 - (50%) Gaps:80/525 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 LYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWNPDD 92
            ||..|..||:...|||....|.:|:.:.:.|:.||.:|.|.:.:||:||:..||.||:|.::.||
  Rat    80 LYHHLFDNYDPECRPVRRPEDTVTITLKVTLTNLISLNEKEETLTTSVWIGIEWQDYRLNFSKDD 144

  Fly    93 YGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFP 157
            :.||:.|.|||||:|||:|||.||.||.:.|......:::..|.|.|.|||||:|.|.::|.|||
  Rat   145 FAGVEILRVPSEHVWLPEIVLENNIDGQFGVAYDCNVLVYEGGSVSWLPPAIYRSTCAVEVTYFP 209

  Fly   158 FDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNI--EVGIDLQDYYISVEWDIMRVPAVRNEKFY 220
            ||.|.|.:.|.|.||:...|:.  :....|..|.  ::.||...:..:.||.|...|.:......
  Rat   210 FDWQNCSLIFRSQTYNAEEVEF--IFAVDDDGNAINKIDIDTAAFTENGEWAIDYCPGMIRHYEG 272

  Fly   221 SCCEEP-YLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDS-GEKISLCISILLSLT 283
            ...|:| ..|:::.|.:|||.|||.:|:|:|||.||.|.:|.::||:.: |:|.::.|::||:.|
  Rat   273 GSTEDPGETDVIYTLIIRRKPLFYVINIIVPCVLISGLVLLAYFLPAQAGGQKCTVSINVLLAQT 337

  Fly   284 VFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVQRLFIQI 348
            ||..|:|:.||.|||:|||||:||:|.|::.||.|:..:.||||:.|:|.||..:|.::::.:::
  Rat   338 VFLFLIAQKIPETSLSVPLLGRYLIFVMVVATLIVMNCVIVLNVSLRTPTTHATSPRLRQILLEL 402

  Fly   349 LPKLLCIERPKKEEPEEDQPPEVLTDVYHLPPDVDKFVNYDSKRFSGDYGIPALPASH------R 407
            ||:||.:. |..|:|....|                      .|.:...|| .|.|..      |
  Rat   403 LPRLLGLS-PPPEDPGAASP----------------------ARRASSVGI-LLRAEELILKKPR 443

  Fly   408 FDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFSPSGLNGDISPGCCPAAAAAAAADLSPTFEKP 472
            .:|...|....|              |.                    ..|||...:||..    
  Rat   444 SELVFEGQRHRH--------------GT--------------------WTAAALCQNLSAA---- 470

  Fly   473 YAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVAMVLDRMFLWIFAIACVVGTALIIL----- 532
             |.|:...::...|:|:..::::.......||..:...||.:..|...:...||:.||.|     
  Rat   471 -APEVRCCVDAVNFVAESTRDQEATGEELSDWVRMGKALDNVCFWAALVLFSVGSTLIFLGGYFN 534

  Fly   533 QAPSL 537
            |.|.|
  Rat   535 QVPDL 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 82/214 (38%)
LIC 27..530 CDD:273305 167/511 (33%)
Neur_chan_memb 247..530 CDD:280999 80/289 (28%)
ChrneXP_017452660.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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