Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038960311.1 | Gene: | Chrna4 / 25590 | RGDID: | 2346 | Length: | 802 | Species: | Rattus norvegicus |
Alignment Length: | 620 | Identity: | 259/620 - (41%) |
---|---|---|---|
Similarity: | 346/620 - (55%) | Gaps: | 106/620 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MGSVLFAAVFIALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVN 65
Fly 66 LKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 130
Fly 131 LHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGI 195
Fly 196 DLQDYYISVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVL 260
Fly 261 VFYLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVL 325
Fly 326 NVNFRSPVTHRMAPWVQRLFIQILPKLLCIERPK--KEE------------------PEEDQPPE 370
Fly 371 VLTDVYH------------------------LPP---------DVDKFVNYDS-------KRFSG 395
Fly 396 --------DYGIPALPASHRFDLAAAGGISA------HCFAE---PPLPSSLPLPGADDDLFSPS 443
Fly 444 GL--NGDISPGCC---------PAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKF 497
Fly 498 ESVEEDWKYVAMVLDRMFLWIFAIACVVGTALIIL 532 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 111/214 (52%) |
LIC | 27..530 | CDD:273305 | 252/590 (43%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 136/370 (37%) | ||
Chrna4 | XP_038960311.1 | LGIC_ECD | 199..405 | CDD:355788 | 111/217 (51%) |
Cys-loop | 323..337 | CDD:349787 | 9/13 (69%) | ||
Neur_chan_memb | 412..781 | CDD:397193 | 136/371 (37%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 253 | 1.000 | Domainoid score | I1995 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 477 | 1.000 | Inparanoid score | I1422 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | mtm12327 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101158 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X294 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
9 | 8.870 |