DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and acr-14

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_495716.1 Gene:acr-14 / 191601 WormBaseID:WBGene00000053 Length:500 Species:Caenorhabditis elegans


Alignment Length:571 Identity:165/571 - (28%)
Similarity:271/571 - (47%) Gaps:132/571 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 FIALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTN 74
            ||.|.|......:.|..||...|..||:...|||.|:|..|.||:...|:|::||:.|||:|:..
 Worm     6 FILLTFYIQVKGSVDEYRLLQYLKENYDSFERPVENSSAPLDVKVRFLLNQIMDVDEKNQVMSIL 70

  Fly    75 VWVEQEWNDYKLKWNPDDYGGVDTLHVPSE-----HIWLPDIVLYNNADGNYEVTIMTKAILHHT 134
            .:::..||||||.|:|..:||:..:....:     .:|.||::|:|:...:::.|..::.|:...
 Worm    71 AYMDYHWNDYKLTWDPKLFGGIRDVRFSGDDDASFKLWRPDVLLFNSVSESFDSTYSSRFIVSSN 135

  Fly   135 GKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHL--------------KQT 185
            |.|...||.|::..|:|||.|:|||:||||:|.|||||:|..::|..|              :..
 Worm   136 GDVQQNPPGIFRFVCQIDVTYYPFDKQTCFLKLGSWTYNGQYINLDFLLTQIIGLHGIPIVVEPE 200

  Fly   186 ADSDN-----IEVGIDLQDYYISVEWDIMRVPAVR-NEKFYSCCEEPYLDIVFNLTLRRKTLFYT 244
            ..|.|     :...||||.|..:.|||:...|..| .:||.:   :.|.::.|.:.:||:||.|.
 Worm   201 RSSTNYASYFVNESIDLQVYLQNGEWDLEGTPGKRVVQKFGT---DEYHELYFYIHIRRRTLAYG 262

  Fly   245 VNLIIPCVGISFLSVLVFYLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLF 309
            :|||||.:.||.:::|.|.||.|:.|||:|..::|||:..|..:::...||.|.:||:|..:...
 Worm   263 INLIIPSLVISMMTILGFTLPPDACEKITLETTVLLSVIFFLQMVSSTSPPQSQSVPILAAFFSC 327

  Fly   310 TMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVQRLFIQILPKLLCIERPKKEEPEEDQP----PE 370
            .:|||..|.|.|:..|:::.|.|.||.|:|.::::||..||.:||:.:|       |.|    |:
 Worm   328 CLMLVACSCVFTVLTLSLHHRKPETHEMSPTMRKIFIDWLPYILCMCKP-------DHPKTPKPK 385

  Fly   371 VL------------TDVYHLP-------PDVDKFVNYDSKRFSGDYGIPALPASHRFDLAAAGGI 416
            ||            ..:.:||       ||.:.||.::         :||:       :.....|
 Worm   386 VLGKSIAPIHRLSTIPMLNLPRVSQTTFPDKNVFVYHE---------VPAV-------IKNTSRI 434

  Fly   417 SAHCFAEPPLPSSLPLPGADDDLFSPSGLNGDISPGCCPAAAAAAAADLSPTFEKPYAREMEKTI 481
            .|....                                                  ..|::||.:
 Worm   435 CAELLI--------------------------------------------------IERDIEKML 449

  Fly   482 EGSRFIAQHVKNKDKFESVEEDWKYVAMVLDRMFLWIF-AIACVVGTALII 531
            :       .::...|.:.:..:|::.||.:||:.|::| |...::...||:
 Worm   450 D-------KIEEDTKEDMLRSEWRFAAMAVDRLCLYVFSAFITMITCGLIV 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 82/239 (34%)
LIC 27..530 CDD:273305 158/551 (29%)
Neur_chan_memb 247..530 CDD:280999 72/306 (24%)
acr-14NP_495716.1 LIC 21..483 CDD:273305 157/544 (29%)
Neur_chan_LBD 21..258 CDD:280998 82/239 (34%)
Neur_chan_memb 265..491 CDD:280999 72/305 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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