DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and acr-11

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_491906.1 Gene:acr-11 / 191599 WormBaseID:WBGene00000050 Length:461 Species:Caenorhabditis elegans


Alignment Length:536 Identity:185/536 - (34%)
Similarity:278/536 - (51%) Gaps:88/536 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LFAAVFIALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 69
            :.:.|.|..:...|.:|.   .:|:.|||..||.|.|||.|:|..|.||:.|.|.|::||:.|||
 Worm     9 ILSLVIIHSNLCDGSVAE---TKLFTDLLKGYNPLERPVQNSSQPLEVKIKLFLQQILDVDEKNQ 70

  Fly    70 IMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVP--SEHIWLPDIVLYNNADGNYEVTIMTKAILH 132
            |::.|.|:...|.|:||:|.|..|||:..:..|  |:|||.||::|||:|..:::.|..:..:.:
 Worm    71 IVSVNAWLSYTWFDHKLQWEPKKYGGIQDIRFPGSSDHIWKPDVLLYNSAAEDFDSTFKSNLLTY 135

  Fly   133 HTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDL 197
            |||.|||.||.:.|..|::||.:||||:|.|.|||||||:.||.:||    |..|..|....:||
 Worm   136 HTGTVVWIPPGVLKFVCQLDVTWFPFDDQVCEMKFGSWTFHGYAIDL----QIDDDTNGTQSMDL 196

  Fly   198 QDYYISVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVF 262
            ..|.::.||.::...|.|...:|.||.|||..:.:.|.:||:||:|..|||||.:.||.:::|.|
 Worm   197 STYLVNGEWQVISTNAKRVVSYYKCCPEPYPTVNYYLHIRRRTLYYGFNLIIPSLLISLMAILGF 261

  Fly   263 YLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNV 327
            ..|.|:||||:|.::|||::..|..:::|:.||||..|||:|.:....|::|:.|||.||.|||:
 Worm   262 MFPPDAGEKITLEVTILLAIVFFLSMVSEMTPPTSEAVPLIGVFFSCCMLVVSASVVFTIVVLNL 326

  Fly   328 NFRSPVTHRMAPWVQRLFIQILPKLLCIERPKKEEPEEDQPPEVLTDVYHLPPDVDKFVNYDSKR 392
            :|||..:|.|.|.|:|:.::.||.||.:.||..                       |||.  :..
 Worm   327 HFRSADSHEMNPLVRRVLLEFLPWLLFMSRPGY-----------------------KFVK--ANV 366

  Fly   393 FSGDYGIPALPASHRFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFSPSGLNGDISPGCCPAA 457
            ......:|..|.:                   ||..:||...|.                     
 Worm   367 IDSTDKMPKKPKN-------------------PLDCNLPSNHAG--------------------- 391

  Fly   458 AAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKF-ESVEEDWKYVAMVLDRMFLWIFAI 521
                       :|...........|..|.:|.:  ||::. |.::.||::.|||:||..|.:|.:
 Worm   392 -----------YEAQILLLHSVHTELRRVVAFY--NKEEHDERIQTDWRFAAMVVDRACLLLFTV 443

  Fly   522 ACVVGTALIILQAPSL 537
            ..|:....|::.||.:
 Worm   444 FIVISILAIMMSAPHI 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 95/216 (44%)
LIC 27..530 CDD:273305 178/505 (35%)
Neur_chan_memb 247..530 CDD:280999 79/283 (28%)
acr-11NP_491906.1 LIC 25..456 CDD:273305 180/515 (35%)
Neur_chan_LBD 26..239 CDD:280998 95/219 (43%)
Neur_chan_memb 246..447 CDD:280999 78/278 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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