Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510028.2 | Gene: | lgc-17 / 187976 | WormBaseID: | WBGene00011359 | Length: | 401 | Species: | Caenorhabditis elegans |
Alignment Length: | 359 | Identity: | 88/359 - (24%) |
---|---|---|---|
Similarity: | 164/359 - (45%) | Gaps: | 58/359 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 LFAAVFIALHFATGGLANPD-------AKRLYDDLLSNYNRLIRPVGNNS-------------DR 49
Fly 50 LTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLY 114
Fly 115 ------NNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYD 173
Fly 174 GYMVDLRHLKQTADSDNIEVGIDLQDYYISV----EWDIM----RVPAVRNEKFYSCCEEPYLDI 230
Fly 231 -VFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPS-DSGEKISLCISILLSLTVFFLLLAEII 293
Fly 294 PPTSLTVPLLGKYLLFTM--MLVTLSVVVTIAVL 325 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 56/242 (23%) |
LIC | 27..530 | CDD:273305 | 81/330 (25%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 23/82 (28%) | ||
lgc-17 | NP_510028.2 | LGIC_ECD_cation | 77..259 | CDD:349790 | 45/200 (23%) |
LGIC_TM | 261..>317 | CDD:365787 | 13/55 (24%) | ||
TM1 helix | 261..286 | CDD:349850 | 6/24 (25%) | ||
TM2 helix | 294..315 | CDD:349850 | 2/20 (10%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |