DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and lgc-17

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_510028.2 Gene:lgc-17 / 187976 WormBaseID:WBGene00011359 Length:401 Species:Caenorhabditis elegans


Alignment Length:359 Identity:88/359 - (24%)
Similarity:164/359 - (45%) Gaps:58/359 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LFAAVFIALHFATGGLANPD-------AKRLYDDLLSNYNRLIRPVGNNS-------------DR 49
            ||:...||..:....|..||       ...|..||.:||:..|..|.::|             ||
 Worm     9 LFSICEIATFYYNPVLYVPDWIDYLNHQDNLTRDLFANYDPTISSVYSSSFDYEPSHNHTRTVDR 73

  Fly    50 LTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLY 114
            ....:.|...:|::|....:.::..:.:.::|.|.:|.||...|..:.|:.|..|.:|.|.:..:
 Worm    74 WNYTILLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNSSLYSNIPTVFVRQEKVWSPTLSAF 138

  Fly   115 ------NNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYD 173
                  :..|.::.:     ..:...|.:.........|.|.:||..||||.|||.:.|      
 Worm   139 GVNEIIDFRDQDFRI-----VSIDDIGYIQDYLSVRVSSNCPMDVSRFPFDSQTCQICF------ 192

  Fly   174 GYMVDLRHLKQTADSDNIEVGIDLQDYYISV----EWDIM----RVPAVRNEKFYSCCEEPYLDI 230
              .:.:.:::|....:.|..|| ||:..|..    ||.::    ||..::.:..|.     .:|:
 Worm   193 --CLPIFNIRQVKILNEIYEGI-LQEKIIKTMGNSEWKVVSLTNRVEQLKYDDDYG-----NMDL 249

  Fly   231 -VFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPS-DSGEKISLCISILLSLTVFFLLLAEII 293
             ||.:|:||..|:|...::.|...|:.:|::..:|.| |...|:::.::.::::|....::|:.|
 Worm   250 AVFEITIRRNPLYYIYMIVFPSFVINGISIVGIFLKSADKMSKLNVGLTNIMTMTFILGVMADKI 314

  Fly   294 PPTSLTVPLLGKYLLFTM--MLVTLSVVVTIAVL 325
            |.|. ::||||.|::..:  |::.::|||.|..|
 Worm   315 PRTG-SIPLLGIYIIINLLIMIIAITVVVLITEL 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 56/242 (23%)
LIC 27..530 CDD:273305 81/330 (25%)
Neur_chan_memb 247..530 CDD:280999 23/82 (28%)
lgc-17NP_510028.2 LGIC_ECD_cation 77..259 CDD:349790 45/200 (23%)
LGIC_TM 261..>317 CDD:365787 13/55 (24%)
TM1 helix 261..286 CDD:349850 6/24 (25%)
TM2 helix 294..315 CDD:349850 2/20 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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