Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510024.2 | Gene: | lgc-14 / 187972 | WormBaseID: | WBGene00011355 | Length: | 400 | Species: | Caenorhabditis elegans |
Alignment Length: | 385 | Identity: | 88/385 - (22%) |
---|---|---|---|
Similarity: | 175/385 - (45%) | Gaps: | 78/385 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 VLFAAVFI---ALHFATGGLANPD--AKRLYD----------DLLSNYNRLIRPVGNNSD----- 48
Fly 49 --------RLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEH 105
Fly 106 IWLPDIVLYNNADGNYEVTIM-----TKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFM 165
Fly 166 KFGSWTYDGYMVDLRHLKQTADSDNIEVGIDLQDYYISV---EWDIM----RVPAVR-NEKFYSC 222
Fly 223 CEEPYLDI-VFNLTLRRKTLFYTVNLIIPCVGISFLSVL-VFYLPSDSGEKISLCISILLSLTVF 285
Fly 286 FLLLAEIIPPTSLTVPLLGKYLL--FTMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVQR 343 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 53/251 (21%) |
LIC | 27..530 | CDD:273305 | 80/357 (22%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 25/100 (25%) | ||
lgc-14 | NP_510024.2 | LGIC_ECD_cation | 75..257 | CDD:349790 | 44/199 (22%) |
LGIC_TM | 259..349 | CDD:365787 | 24/98 (24%) | ||
TM1 helix | 259..284 | CDD:349850 | 8/24 (33%) | ||
TM2 helix | 292..313 | CDD:349850 | 2/20 (10%) | ||
TM3 helix | 323..345 | CDD:349850 | 4/21 (19%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |