DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and lgc-14

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_510024.2 Gene:lgc-14 / 187972 WormBaseID:WBGene00011355 Length:400 Species:Caenorhabditis elegans


Alignment Length:385 Identity:88/385 - (22%)
Similarity:175/385 - (45%) Gaps:78/385 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VLFAAVFI---ALHFATGGLANPD--AKRLYD----------DLLSNYNRLIRPVGNNSD----- 48
            |.|..:||   ||::      ||:  ..:.:|          ||.:.|:..:.||.:..|     
 Worm     4 VTFTVIFIGSHALYY------NPELYVPKYHDFIESQTNLTRDLFNGYDPTVSPVYSKIDPLQPL 62

  Fly    49 --------RLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEH 105
                    |....:.|...:|::||...:.:...:.:.:.|.|.:|.||...|..:||.:....:
 Worm    63 GYDPDAPKRYNYSIMLYSLKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNASLYDDIDTFYTRQSN 127

  Fly   106 IWLPDIVLYNNADGNYEVTIM-----TKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFM 165
            :|.|.:    :|.|..|:..:     ....::..|.:.........|.|.::|..||||.|||.:
 Worm   128 VWSPTL----SAFGADELVDLRDPDFRMVCVNSNGYIYDYISVRVSSSCPMNVYKFPFDYQTCQI 188

  Fly   166 KFGSWTYDGYMVDLRHLKQTADSDNIEVGIDLQDYYISV---EWDIM----RVPAVR-NEKFYSC 222
            ||....::...:.:        .:.|.||:.:.|.:.::   ||.:.    ||..:: |:.|.: 
 Worm   189 KFCLPIFNSVEIQI--------FNEIYVGVLMSDLWETMGNSEWKLTNLSNRVETLQYNDGFGN- 244

  Fly   223 CEEPYLDI-VFNLTLRRKTLFYTVNLIIPCVGISFLSVL-VFYLPSDSGEKISLCISILLSLTVF 285
                 ||: :|.:|::|..|:|...:|.|...|:.:|:: ||...:|...::::.::.::::|..
 Worm   245 -----LDLGIFEITIKRNPLYYIYMIIFPSFIINVVSIIGVFLKGADKMSRLNVGLTNIMTMTFI 304

  Fly   286 FLLLAEIIPPTSLTVPLLGKYLL--FTMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVQR 343
            ..::|:.||.|. |:|:||.|::  ..:|::.:.:|..|..|.        |.:||:::|
 Worm   305 LGVMADKIPRTG-TIPMLGVYIIVNLAIMIIAIGIVTMITELR--------HWLAPFLKR 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 53/251 (21%)
LIC 27..530 CDD:273305 80/357 (22%)
Neur_chan_memb 247..530 CDD:280999 25/100 (25%)
lgc-14NP_510024.2 LGIC_ECD_cation 75..257 CDD:349790 44/199 (22%)
LGIC_TM 259..349 CDD:365787 24/98 (24%)
TM1 helix 259..284 CDD:349850 8/24 (33%)
TM2 helix 292..313 CDD:349850 2/20 (10%)
TM3 helix 323..345 CDD:349850 4/21 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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