DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and lgc-12

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_498656.3 Gene:lgc-12 / 187855 WormBaseID:WBGene00020048 Length:428 Species:Caenorhabditis elegans


Alignment Length:376 Identity:102/376 - (27%)
Similarity:179/376 - (47%) Gaps:52/376 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWNP 90
            :.|...|:.:|.:..|||.|.|..|||.:..::..|::||.:|:.:...:|..|.|.|..|.|:|
 Worm    30 RELVKHLMKDYYQFTRPVKNYSSMLTVTIMPQIYNLVEVNEQNEQIKLLIWFPQSWKDDYLVWDP 94

  Fly    91 DDYGGVDTLHVPSEHIWLPDIVLYNNAD-----GNYEVTIMTKAILHHTGKVVWKPPAIYKSFCE 150
            |::.|::.:.:|...:||||..::|..:     .|:.|.:      |:.|||......:....|.
 Worm    95 DEWDGIEKITIPKSMVWLPDGYIFNTVEETDTLDNHNVRV------HYNGKVEVDFNKLIDLICP 153

  Fly   151 IDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDLQDYYISVEWDIMRVPAVR 215
            :.|..||||.|.|.::||||||..:.:....|:.:.:.:|           .:.||||:...|.:
 Worm   154 MSVLSFPFDVQLCALQFGSWTYQSHALSFNVLEASVNENN-----------KNSEWDIVAFNATK 207

  Fly   216 NEKFYSCC---EEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLP----SDSGEKIS 273
            ....|...   :..|.:|.:.|.:|||.|:|.|.::||...|..:|.:..:.|    .|..|.:|
 Worm   208 KVSKYMNLIGGDNVYEEIFYFLEVRRKPLYYIVVILIPTFLIVTVSNIGLFTPHGVHGDREEHVS 272

  Fly   274 LCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMA 338
            |.::.:|::.|...::...:|.:|..:||||.|:|....|..::|:|::.::..:.|......|.
 Worm   273 LGLTTMLTMAVILDMVTGQMPKSSEGIPLLGMYVLIEFALSIMAVLVSVLIIFAHERMLYMDAMP 337

  Fly   339 P-WVQRLF---------------------IQILPKL-LCIERPKKEEPEED 366
            | |:.|||                     :.:..:| .|||:.:|...:.|
 Worm   338 PFWIFRLFSKHKNQIPLAEMEYDDLRSSPVDLAQELRFCIEKVRKHLEDLD 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 63/221 (29%)
LIC 27..530 CDD:273305 102/375 (27%)
Neur_chan_memb 247..530 CDD:280999 35/147 (24%)
lgc-12NP_498656.3 Neur_chan_LBD 29..235 CDD:280998 63/221 (29%)
Neur_chan_memb 242..>345 CDD:280999 27/102 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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