Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001355512.1 | Gene: | acr-21 / 185004 | WormBaseID: | WBGene00000060 | Length: | 635 | Species: | Caenorhabditis elegans |
Alignment Length: | 662 | Identity: | 205/662 - (30%) |
---|---|---|---|
Similarity: | 312/662 - (47%) | Gaps: | 163/662 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 AVFIALHFATGG-----LANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLK 67
Fly 68 NQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIM-TKAIL 131
Fly 132 HHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGID 196
Fly 197 LQDYYISVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLV 261
Fly 262 FYLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLN 326
Fly 327 VNFRSPVTHRMAPWVQRLFIQILPKLLCI------------------ERP--------------- 358
Fly 359 -------KKEEP---EEDQPP-EVLTDVYHLPPDVDKFV-----------NYDSKR--------- 392
Fly 393 ---------------------------------FS--GDYGIP---------------ALPASHR 407
Fly 408 FDLAAAGGISAHCFAEPPLPSSLPLPG----AD-DDLFSPSGLNGDISPGCCPAAAAAAAADLSP 467
Fly 468 TFEKPYAREMEKT---IEGSRFIAQHVKNKDKFESVEEDWKYVAMVLDRMFLWIFAIACVVGTAL 529
Fly 530 IILQAPSLYDQS 541 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 93/215 (43%) |
LIC | 27..530 | CDD:273305 | 197/625 (32%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 101/404 (25%) | ||
acr-21 | NP_001355512.1 | LGIC_ECD_nAChR | 56..237 | CDD:349798 | 82/189 (43%) |
Cys-loop | 156..170 | CDD:349798 | 7/13 (54%) | ||
LGIC_TM_cation | 239..>327 | CDD:349853 | 42/87 (48%) | ||
TM1 helix | 239..263 | CDD:349853 | 12/23 (52%) | ||
TM2 helix | 271..292 | CDD:349853 | 10/20 (50%) | ||
TM3 helix | 303..325 | CDD:349853 | 7/21 (33%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |