Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_501411.4 | Gene: | lgc-5 / 184620 | WormBaseID: | WBGene00017543 | Length: | 433 | Species: | Caenorhabditis elegans |
Alignment Length: | 391 | Identity: | 83/391 - (21%) |
---|---|---|---|
Similarity: | 177/391 - (45%) | Gaps: | 65/391 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 39 LIRPVGNNSDRLTVKMGLRLSQLI----DVNLKNQIMTTNVWV-------------------EQE 80
Fly 81 ----WNDYKLKWNPD--DYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTI---MTKAILHHTGK 136
Fly 137 VVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDLQDYY 201
Fly 202 I-SVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLP 265
Fly 266 -SDSGEKIS---LCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLN 326
Fly 327 VNFRSPVTHRMAP-WVQRLFIQILPKLLCIERPKKEEPEE-------DQPPEVLTDVYHLPPDVD 383
Fly 384 K 384 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 50/233 (21%) |
LIC | 27..530 | CDD:273305 | 83/391 (21%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 31/150 (21%) | ||
lgc-5 | NP_501411.4 | LGIC_ECD_cation | 51..235 | CDD:349790 | 40/194 (21%) |
LGIC_TM | 238..>323 | CDD:365787 | 19/85 (22%) | ||
TM1 helix | 238..261 | CDD:349850 | 2/22 (9%) | ||
TM2 helix | 273..294 | CDD:349850 | 3/20 (15%) | ||
TM3 helix | 304..323 | CDD:349850 | 4/18 (22%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |