DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and lgc-21

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_510341.2 Gene:lgc-21 / 181516 WormBaseID:WBGene00007903 Length:462 Species:Caenorhabditis elegans


Alignment Length:348 Identity:78/348 - (22%)
Similarity:138/348 - (39%) Gaps:66/348 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDY 84
            ||...||:|....:.:....|.|...:...:|:.......|..::|...:.::.:.::|..|:|.
 Worm    83 LAGESAKKLAKLNIPHAIASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWHDD 147

  Fly    85 KLKWNPDDYGG----VDTLHVPSEHIWLPDIVLYN------NADGNYEVTIMTKAILHHTGKVVW 139
            :|.||.|.:..    |.:.|    |||:|.:...|      |.|. :|:   .|....:.|.|..
 Worm   148 RLMWNQDTWKKNKLVVHSFH----HIWVPLLGSQNPENHLKNGDA-FEI---RKVETTNQGNVSA 204

  Fly   140 KPPAIYKSFC-EIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGID---LQDY 200
            |.....::|| :.|.|.:|.|...|...|..      ..|...::.|  |..:.:..|   .:||
 Worm   205 KVAFSLRTFCDDTDFENYPNDVYKCCFSFEP------QQDREVIQFT--SSGLPIFTDPKNFRDY 261

  Fly   201 YISVEWDIM-RVPAVRNEKFYSCCEEP--YLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVF 262
                .|.:. .||    |.|    ::|  ...:.|.|.|:|......:.|.||.    |::..:|
 Worm   262 ----GWGVSGTVP----ESF----DDPSEIAQLGFCLNLKRAHSSLKIELAIPL----FITTALF 310

  Fly   263 YLPSDSGE-KISLCISI------LLSLTVFFLLLAEIIPPTSLT---VPLLGKYLLFTMMLVTLS 317
            .||...|. ||.:.:.:      .::|.:|...:|..:..|:.|   :..|...|:|.::.:|.|
 Worm   311 LLPPLFGSVKIQIYLKMFVMGLQFMTLLIFSTRIAPFLSSTASTPKPMRFLEIALVFNLISITTS 375

  Fly   318 VVVTIAVLNVNFRSPVTHRMAPW 340
            :::...:       .|...:.||
 Worm   376 IIIFCCM-------QVKRTLPPW 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 53/231 (23%)
LIC 27..530 CDD:273305 74/341 (22%)
Neur_chan_memb 247..530 CDD:280999 23/104 (22%)
lgc-21NP_510341.2 LGIC_ECD 113..290 CDD:355788 47/204 (23%)
Cys-loop 214..229 CDD:349787 5/14 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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