Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510341.2 | Gene: | lgc-21 / 181516 | WormBaseID: | WBGene00007903 | Length: | 462 | Species: | Caenorhabditis elegans |
Alignment Length: | 348 | Identity: | 78/348 - (22%) |
---|---|---|---|
Similarity: | 138/348 - (39%) | Gaps: | 66/348 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 20 LANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDY 84
Fly 85 KLKWNPDDYGG----VDTLHVPSEHIWLPDIVLYN------NADGNYEVTIMTKAILHHTGKVVW 139
Fly 140 KPPAIYKSFC-EIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGID---LQDY 200
Fly 201 YISVEWDIM-RVPAVRNEKFYSCCEEP--YLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVF 262
Fly 263 YLPSDSGE-KISLCISI------LLSLTVFFLLLAEIIPPTSLT---VPLLGKYLLFTMMLVTLS 317
Fly 318 VVVTIAVLNVNFRSPVTHRMAPW 340 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 53/231 (23%) |
LIC | 27..530 | CDD:273305 | 74/341 (22%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 23/104 (22%) | ||
lgc-21 | NP_510341.2 | LGIC_ECD | 113..290 | CDD:355788 | 47/204 (23%) |
Cys-loop | 214..229 | CDD:349787 | 5/14 (36%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |