DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and acr-2

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_509128.1 Gene:acr-2 / 180936 WormBaseID:WBGene00000042 Length:575 Species:Caenorhabditis elegans


Alignment Length:552 Identity:219/552 - (39%)
Similarity:312/552 - (56%) Gaps:81/552 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 GGLANPDAKRLYDDLLSNYNRLIRPVGN-NSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEW 81
            |.....|..||..||...||.|||||.| :|..:.|..|:.:..||:|:.||||:.||||:..:|
 Worm    53 GDTMGEDEDRLVIDLFREYNFLIRPVKNVSSPPVVVDFGVAMILLINVDEKNQILQTNVWLTMKW 117

  Fly    82 NDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYK 146
            ||::|.|||.:||.:..|||||:.:|||||||:|||||||||:..:...:.|.|.|.|.|||::|
 Worm   118 NDFQLAWNPAEYGNISNLHVPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTWVPPAMFK 182

  Fly   147 SFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDLQDYYISVEWDIMRV 211
            |.|.||||:||||||.|.:.||||||:...|.|...      :||: .:.|.||..|..||::.|
 Worm   183 SSCRIDVEWFPFDEQCCTLVFGSWTYNSEEVRLHWY------NNIQ-AVQLHDYSYSGIWDVIDV 240

  Fly   212 PAVRNEKFYSCCEEPYL---DIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKIS 273
            |.       ....:|.|   .:|||:.:|||||||||.||||.|.::||||:.||||.|||||:|
 Worm   241 PG-------QLVHKPDLKENKMVFNVVIRRKTLFYTVILIIPTVLMAFLSVMAFYLPVDSGEKVS 298

  Fly   274 LCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMA 338
            |.||:||:|.||.||:::|:|||| .:||:|||||...:|...:||.|:.::|:.|||.::|:|.
 Worm   299 LTISLLLALVVFLLLVSKILPPTS-NIPLMGKYLLLAFVLNITAVVGTVVIVNIYFRSALSHKMP 362

  Fly   339 PWVQRLFIQILPKLLCIERPKKEEPEEDQPPEVLTDVYHLPPDVDKFVN--YDSKRFSGDYGIPA 401
            .||:::|::.||.||.::||::                 :|.....||.  ..|:.|.....:|:
 Worm   363 TWVRKVFLEFLPHLLVMKRPER-----------------IPIFNGYFVEEYCASEIFDASLVMPS 410

  Fly   402 LPASH------RFDLAAAGGISAHCFAEPPLPSS--------------LPLPGADDD----LFSP 442
            :.|:.      ..:|.||...|:...:|.....|              .|....|||    :...
 Worm   411 MTATMLPFLQVTTNLKAASSTSSGQSSEHHENCSKWKKRLSIRMSKRRAPRARLDDDSEDIIDDT 475

  Fly   443 SGLNGDISPGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYV 507
            :|.:.|                   :.::..::||:.|:|...:||:|:|.:...:.:.:|||||
 Worm   476 NGNHVD-------------------SLQEKISKEMKTTVEAIAYIAEHMKREMSLKKMRDDWKYV 521

  Fly   508 AMVLDRMFLWIFAIACVVGTALIILQAPSLYD 539
            ||||||:.|.||....:.||..||..||.::|
 Worm   522 AMVLDRLILLIFFGVTLGGTLGIICSAPHVFD 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 102/218 (47%)
LIC 27..530 CDD:273305 212/532 (40%)
Neur_chan_memb 247..530 CDD:280999 103/308 (33%)
acr-2NP_509128.1 LIC 54..544 CDD:273305 213/540 (39%)
Neur_chan_LBD 60..265 CDD:280998 102/218 (47%)
Neur_chan_memb 272..544 CDD:280999 103/308 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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