DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and lgc-10

DIOPT Version :9

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001293778.1 Gene:lgc-10 / 177409 WormBaseID:WBGene00022247 Length:450 Species:Caenorhabditis elegans


Alignment Length:555 Identity:126/555 - (22%)
Similarity:221/555 - (39%) Gaps:136/555 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SVLFAAVFIALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLK 67
            |:|.....:.:|..|..:.|        |:...|:|.:.|.....  :.|.|.:.|..||::...
 Worm    13 SLLLVNETMCVHNETSAILN--------DIFVGYDRRVLPFVQGP--VLVNMTIVLGILIELKEN 67

  Fly    68 NQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI-L 131
            .|:....:...|.|.|.:|.|:|..|.|...:.||...:|:|.:.:||:.:....:|.....: |
 Worm    68 QQLAAYVISHTQRWYDGRLSWDPSKYRGQREVIVPQTMVWIPKLFVYNSLESKDMLTENRADVRL 132

  Fly   132 HHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGID 196
            :|.|::....|...::.|.|..|.||||.|.|.:...|     .::::..:...|....      
 Worm   133 YHNGRIKINIPQYVQAICRIQTESFPFDCQFCAVALAS-----PLLNVNEMVVNATQPP------ 186

  Fly   197 LQDYYIS--VEWDIMRVPAVRNEKFYSCCE-EPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLS 258
             :|.|.|  .||.:..| .||:..|..  | |..::|.:...|:|:.::|...::.|...||.||
 Worm   187 -RDSYFSGNAEWYLFNV-TVRHMTFEE--EGESRVEIHYVFHLQRRPIYYITVIVAPTFLISALS 247

  Fly   259 VLVFYLP-SDSG---EKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVV 319
            :|..:.| |:.|   ||:||.:..||::||...::|..:|.:: .:||||.|:|..::|..::|.
 Worm   248 ILGIFSPGSNDGPRNEKVSLGLGSLLAMTVLLGIVAGAMPKSN-DIPLLGYYILAVIVLCAVAVA 311

  Fly   320 VTIAVLNVNFRSPVTHRMAPWVQRLFIQILPKLLCIERPKKEEPEEDQPPEVLTDVY-HLPPDVD 383
            :::..|.|.              |.:||           |::.|.:    .:|..:: |      
 Worm   312 ISMMFLAVT--------------RHYIQ-----------KEQMPSK----RILRFLFLH------ 341

  Fly   384 KFVNYDSKRFSGDYGIPALPASHRFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFS--PSGLN 446
               .|..:|.:...|:    .::||        :..|               ||.::|  |    
 Worm   342 ---EYRKRRSTVFRGV----HNYRF--------NQEC---------------DDLMYSKVP---- 372

  Fly   447 GDISPGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVAMVL 511
             :|...|                     ..||:..:..|.:.:....|...:.:|.:|..|....
 Worm   373 -EIQSIC---------------------MMMEEIADSHRSMRRKADMKANKKMIEREWARVFARF 415

  Fly   512 DRMFLWIFAIACVVGTALII------LQAPSLYDQ 540
            |..||..|....:  :||:|      |..|.|.:|
 Worm   416 DYFFLAAFETLNL--SALVIFLRTAWLPTPELREQ 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 54/218 (25%)
LIC 27..530 CDD:273305 115/513 (22%)
Neur_chan_memb 247..530 CDD:280999 60/289 (21%)
lgc-10NP_001293778.1 Neur_chan_LBD 28..229 CDD:280998 55/225 (24%)
Neur_chan_memb 236..>342 CDD:280999 36/144 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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