Sequence 1: | NP_001262916.1 | Gene: | nAChRalpha1 / 42918 | FlyBaseID: | FBgn0000036 | Length: | 597 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_598281.1 | Gene: | Chrnb3 / 171131 | RGDID: | 621544 | Length: | 464 | Species: | Rattus norvegicus |
Alignment Length: | 551 | Identity: | 229/551 - (41%) |
---|---|---|---|
Similarity: | 316/551 - (57%) | Gaps: | 113/551 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 FAAVFIALH----------FATGGLA----NPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGL 56
Fly 57 RLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNY 121
Fly 122 EVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTA 186
Fly 187 DSDNIEVGIDLQDYYISVEWDIMRVPAV---RNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLI 248
Fly 249 IPCVGISFLSVLVFYLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMML 313
Fly 314 VTLSVVVTIAVLNVNFRSPVT-HRMAPWVQRLFIQILPKLLCIERPKKEEPEEDQPPEVLTDVYH 377
Fly 378 LPPDVDKFVNYDSKRFSGDYGIPALPASHRFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFSP 442
Fly 443 SGLNGDISPGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYV 507
Fly 508 AMVLDRMFLWIFAIACVVGTALIILQAPSLY 538 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRalpha1 | NP_001262916.1 | Neur_chan_LBD | 25..240 | CDD:280998 | 106/217 (49%) |
LIC | 27..530 | CDD:273305 | 216/506 (43%) | ||
Neur_chan_memb | 247..530 | CDD:280999 | 107/283 (38%) | ||
Chrnb3 | NP_598281.1 | LIC | 29..455 | CDD:273305 | 220/520 (42%) |
Neur_chan_LBD | 35..239 | CDD:280998 | 107/219 (49%) | ||
Neur_chan_memb | 246..452 | CDD:280999 | 108/284 (38%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 253 | 1.000 | Domainoid score | I1995 |
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG45250 | |
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | mtm12327 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
7 | 6.830 |